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18 protocols using rabbit anti gfp

1

Antibody Validation for Western Blot

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Antibodies and their conditions of use are as follows: mouse anti-His (western blot, 1 : 1000; 34660; Qiagen), rabbit anti-Brl1 (western blot, 1 : 1000; made in-house), rabbit anti-Tub2 (western blot, 1 : 1000; made in-house) and rabbit anti-GFP (western blot, 1 : 1000; Proteintech), rabbit anti-HA (western blot, 1 : 500; Proteintech), rabbit anti-GFP (immuno-EM, 1 : 5; gift from M. Seedorf, Zentrum für Molekulare Biologie, Heidelberg, Germany).
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2

Antibody-based Detection of ASFV Proteins

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Rabbit antisera specific for ASFV CP204L, B646L, E183L (56 (link)), and A137R (our unpublished data) proteins were used at dilutions of 1:20,000 for immunoblotting. The primary antibodies used for immunoblotting included rabbit anti-GFP (Chromotek), rabbit anti-VPS39 (PA5-21104; Thermo Fisher), mouse anti-tubulin (B-5-1-2; Sigma-Aldrich), and mouse anti-GAPDH (glyceraldehyde-3-phosphate dehydrogenase; MCA4739; Bio-Rad). The secondary antibodies used were peroxidase-conjugated goat anti-mouse and anti-rabbit IgG (Jackson ImmunoResearch). The additional primary antibodies used for immunofluorescence were mouse anti-vimentin (MA1-06908; Thermo Fisher), rabbit anti-Rab7 (PA5-52369; Thermo Fisher), mouse anti-LAMP-1 (MCA2315GA; Bio-Rad), and rabbit anti-VPS11 (PA5-21854; Thermo Scientific). The secondary antibodies were Alexa Fluor 647-conjugated goat anti-rabbit IgG (H+L) and goat anti-mouse IgG (H+L) (Invitrogen).
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3

GFP Immunoprecipitation and Immunoblotting

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The samples were prepared by mechanically homogenizing the worm bed in homogenization buffer (15mM HEPES-NaOH pH 7.4, 1.5 mM MgCl2, 10 mM KCl, 0.1 mM EDTA, 0.5 mM EGTA) supplemented with protease inhibitors (Roche) followed by homogenization by sonicator. The samples were incubated with rabbit Anti-GFP (1:50) (Chromotek) overnight at 4°C. The antigen-antibody complex was incubated with proteinA/G beads (Santacruz) for 3–4 hours at 4°C. The immunoblots were probed with rabbit Anti-GFP or mouse monoclonal Anti-mscarlet (Chromotek) with a dilution of 1:1000.
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4

Antibody Staining Protocol for Drosophila

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The following antibodies were used: anti-FLAG (Sigma Aldrich, F1804, 1:5000 for western, 1:500 for immunofluorescence), mouse anti-BicD (Clones 1B11 and 4C2, Developmental Studies Hybridoma Bank, 1:30 for immunofluorescence; 1:300 for western, donor R. Steward), rabbit anti-Ctp (Abcam, ab51603, 1:5000 for western), GFP nanobody booster (Chromotek; 1:500 for immunofluorescence), mouse anti-GFP (Clontech, JL-8, 1:5000 for western), rabbit anti-GFP (Chromotek; 1:3000 for immunofluorescence), C3G (generous gift from S. Hawley, mouse anti-C(3)G, 1:500), Orb (mouse anti-Orb, clone 4H8, 1:30 dilution), mouse anti-Dhc (Developmental Studies Hybridoma Bank, clone 2C11-2, 1:50; for immunofluorescence, donor J. Scholey), rabbit anti-Glued (generous gift from V. Gelfand, 1:500 for immunofluorescence). The following secondary antibodies were used: goat anti-rabbit Alexa 594, 555 and 488 (Life Technologies, 1:400, 1:400 and 1:200 respectively); goat anti-mouse Alexa 594, 555 and 488 (Life Technologies, 1:400, 1:400 and 1: 200 respectively) goat anti-mouse HRP (Pierce, 1:5000); and goat anti-rabbit HRP (Pierce, 1:5000).
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5

GFP Immunoprecipitation and Immunoblotting

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The samples were prepared by mechanically homogenizing the worm bed in homogenization buffer (15mM HEPES-NaOH pH 7.4, 1.5 mM MgCl2, 10 mM KCl, 0.1 mM EDTA, 0.5 mM EGTA) supplemented with protease inhibitors (Roche) followed by homogenization by sonicator. The samples were incubated with rabbit Anti-GFP (1:50) (Chromotek) overnight at 4°C. The antigen-antibody complex was incubated with proteinA/G beads (Santacruz) for 3–4 hours at 4°C. The immunoblots were probed with rabbit Anti-GFP or mouse monoclonal Anti-mscarlet (Chromotek) with a dilution of 1:1000.
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6

Leaf Protein Extraction and Detection

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To extract total leaf protein, 100 mg of agroinfiltrated leaf tissue was ground to a powder with a pestle and liquid nitrogen. The powdered sample was homogenized in protein extraction buffer [10% glycerol, 25 mM Tris-HCl (pH 7.5), 200 mM NaCl, 1 mM ethylenediaminotetraacetic acid (EDTA), 0.15% IGEPAL ® CA-630 (Octylphenoxy poly(ethyleneoxy)ethanol, branched), 10 mM dithiothreitol, and protease inhibitor cocktail (Roche)] and centrifuged for 4 min at 12,000 g at 4°C, to pellet the crude extract and the supernatant collected.
Protein extracts were analyzed on an SDS-PAGE gel (46) (link) and electrophoretically transferred onto a nitrocellulose membrane (47) (link). For immunological detection of GFP-tagged and RFPtagged proteins, rabbit anti-GFP (1:1000) and mouse anti-RFP (1:2000) (ChromoTek) monoclonal primary antibodies were used in combination with anti-rabbit or anti-mouse IgG horseradish peroxidase conjugated secondary antibodies. The blotted membrane was incubated with Pierce Enhanced Chemiluminescence ECL-Plus substrate and chemiluminescence signals imaged using X-ray film (Fujifirm, Toyo, Japan).
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7

Antibodies Used for Protein Detection

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The following antibodies were used: anti-FLAG (Sigma Aldrich, F1804, 1:5000 for western, 1:500 for immunofluorescence), mouse anti-BicD (Clones 1B11 and 4C2, Developmental Studies Hybridoma Bank, 1:30 for immunofluorescence; 1:300 for western, donor R. Steward), rabbit anti-Ctp (Abcam, ab51603, 1:5000 for western), GFP nanobody booster (Chromotek; 1:500 for immunofluorescence), mouse anti-GFP (Clontech, JL-8, 1:5000 for western), rabbit anti-GFP (Chromotek; 1:3000 for immunofluorescence), C3G (generous gift from S. Hawley, mouse anti-C(3)G, 1:500), Orb (mouse anti-Orb, clone 4H8, 1:30 dilution), mouse anti-Dhc (Developmental Studies Hybridoma Bank, clone 2C11-2, 1:50; for immunofluorescence, donor J. Scholey), rabbit anti-Glued (generous gift from V. Gelfand, 1:500 for immunofluorescence). The following secondary antibodies were used: goat anti-rabbit Alexa 594, 555 and 488 (Life Technologies, 1:400, 1:400 and 1:200 respectively); goat anti-mouse Alexa 594, 555 and 488 (Life Technologies, 1:400 , 1:400 and 1: 200 respectively) goat anti-mouse HRP (Pierce, 1:5000); and goat anti-rabbit HRP (Pierce, 1:5000).
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8

Western Blot Analysis of DENV Infection

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U2OS cells were transfected with the indicated plasmids using XtremeGene360 (Roche). When specified, cells were infected with DENV for the indicated timepoints. Cells were lysed in 1x RIPA + protease inhibitor + 0.1% SDS cocktail (Sigma). Lysates were sonicated prior to being separated by SDS PAGE using a 4-20% Tris-glycine polyacrylamide pre-cast gel (BioRad) and transferred to nitrocellulose membranes. Following 30 min of blocking in PBS + 10% non-fat milk, membranes were probed with the indicated primary antibodies: mouse anti-V5 (Invitrogen), rabbit anti-GFP (Proteintech), mouse anti-GFP (Proteintech), mouse anti-actin (Proteintech, rabbit anti-actin (Proteintech), and rabbit anti-DENV NS3 (GeneTex) followed by near-infrared dye-conjugated secondary antibodies (LiCor) diluted in PBST + 5% non-fat milk and imaged on an Odyssey CLx imaging system (LiCor).
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9

Antibody Characterization and Detection

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Rabbit anti-CENP-R (10743-1-AP, Proteintech), mouse anti-tubulin (3873, Cell Signaling Technology), rabbit anti-GFP (50430-2-AP, Proteintech), mouse anti-His tag (23665, Cell Signaling Technology), mouse anti-FLAG (F3165, Sigma), anti-Cyclin B1 (12231, Cell Signaling Technology), anti-Hec1 (AB3613, Abcam), anti-Aurora B (611082, BD), anti-CENP-U (HPA022048, Atlas), and human anti-centromere auto-antibody (ACA, HCT-0100, Immunovision) were obtained commercially. For all western blotting, signals were detected using HRP-conjugated anti-mouse or anti-rabbit antibodies (Pierce).
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10

Antibody Verification for Protein Studies

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Goat anti-FE65 (E-20), mouse anti-ARF6 (3A-1), mouse anti-ARNO (H-7), mouse anti-c-Jun (D-11) and mouse anti-α-Tubulin (DM1A) were purchased from Santa Cruz. Rabbit anti-ARNO, rabbit anti-GFP, rabbit anti-His and rabbit anti-FLAG were obtained from Proteintech. Mouse anti-myc antibody (9B11) and rabbit anti-COX IV (3E11) were obtained from Cell Signaling Technology. Mouse anti-pan-cadherin (C1821), mouse anti-β-COP (maD) and mouse anti-FLAG antibody (M2) were obtained from Sigma. Goat anti-GST antibody was obtained from GeneTex. Mouse anti-GAPDH (AM4300) was purchased from Ambion. Rabbit anti-β-Tubulin was purchased from Abcam. Rabbit anti-FE65 was as previously described [13 (link),14 (link)]. Rat polyclonal antibodies against ARF6, ARNO and GST were created by immunization of rats with ARF6, ARNO and GST bacterial proteins, respectively.
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