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2 protocols using rabbit sirt3

1

Western Blot Detection of Protein Modifications

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PVDF membranes were blocked in 5% non-fat dry milk in TTBS for 30–60 min. Primary antibodies were diluted in 5% non-fat dry milk in TTBS and the PVDF membrane was incubated at 4°C for 24–48 h. Secondary-HRP antibodies were also diluted in 5% non-fat dry milk in TTBS and the membrane was incubated for 1 h (hr) at RT. The membrane was submersed in SuperSignal TM West Pico Plus Chemiluminescent Substrate (Thermo Fisher Scientific, 34577) following the manufacturer’s protocol and a ChemidocTM MP imaging system (Bio-Rad) was used to develop the membranes.
Primary antibodies used include: mouse α-tubulin IgG1 (Sigma-Aldrich, T6199), mouse-myc IgG1 (Thermo Fisher, R950-25), mouse SOD2-A2 IgG2b (Santa Cruz, sc-133134), rabbit acetyl K68 SOD2 IgG (Abcam, ab137037), mouse anti-Poly-ADP-Ribose IgG3 (Trevigen, 4335-MC-100), rabbit SIRT3 (Cell Signaling, D22A3), rabbit mAb androgen receptor (Cell Signaling, D6F11), mouse ANTI-FLAG M2 (Sigma, F1804).
Secondary antibodies used include: Goat anti-rabbit IgG-HRP (Invitrogen, 65–6120), Goat anti-mouse IgG1-HRP (Invitrogen, A10551), Goat anti-mouse IgG2B-HRP (Novus, P33), Goat anti-mouse IgG3-HRP (Invitrogen, M32607)
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2

Protein Expression and Co-Immunoprecipitation

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Protein lysates were prepared in LDS sample buffer, separated using Bolt SDS/PAGE 4–12% or 12% Bis‐Tris gels, and transferred to nitrocellulose membranes (Life Technologies). Protein expression was analyzed using the following primary antibodies: rabbit SIRT3, rabbit acetyl‐lysine (Ac‐K), rabbit glutamate dehydrogenase (GDH), mouse tubulin, and rabbit pyruvate dehydrogenase (PDH) from Cell Signaling Technologies; rabbit phospho‐PDH (Ser 293) from Novus; GCN5L1 as reported previously (Scott et al. 2012). Fluorescent anti‐mouse or anti‐rabbit secondary antibodies (red, 700 nm; green, 800 nm) from LiCor were used to detect expression levels. For co‐immunoprecipitation experiments, protein lysates were harvested in CHAPS buffer, and equal amounts of total protein were incubated overnight at 4°C with the relevant antibody or an IgG control. Immunocaptured proteins were isolated using Protein‐G agarose beads (Cell Signaling Technology), washed multiple times with CHAPS buffer and then eluted in LDS sample buffer at 95°C. Samples were separated on 12% Bis‐Tris Bolt gels and probed with appropriate antibodies. Protein densitometry was measured using Image J software (National Institutes of Health, Bethesda, MD). Protein loading was further confirmed using GDH or tubulin loading controls where appropriate.
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