The largest database of trusted experimental protocols

17 protocols using occludin

1

Characterization of Epithelial Cell Junctions

Check if the same lab product or an alternative is used in the 5 most similar protocols
TMEM47 polyclonal antibodies raised in rabbits against the cytoplasmic C-terminal peptide (CLNPKNYEDYY) were generated by Biosource (Life Technologies, Grand Island, NY). E-Cadherin, ZO-1, Occludin, and Claudin 1 antibodies were purchased from Zymed (Life Technologies), PKCλ from Transduction Labs (BD Biosciences, San Jose, CA), Par6A from Santa Cruz Bitoech (sc-14405, Santa Cruz, CA), and Par6B was from Sigma (#B8062) or a gift from James Nelson (Stanford University). F-actin was identified by incubation with TRITC-labeled phalloidin (Sigma Aldrich, St. Louis, MO) as previously described (Azhibekov et al., 2011 ) . Rabbit anti-ZOO-1 antibody was a gift from Jeff Hardin (University of Wisconsin) and used at 1:100 dilution.
+ Open protocol
+ Expand
2

Histopathological Analysis of Lung Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Histopathological analysis was performed as described before25 (link). Briefly, mice were sacrificed and lung tissues were inflated and fixed in PFA, embedded in paraffin or frozen in optimal cutting temperature compound (OCT) and sectioned for hematoxylin and eosin (H&E) staining. Immunohistochemical and immunofluorescence analyses were performed as described34 (link). Antibodies against the following proteins were used: KI-67 (Novocastra Laboratories Ltd), CDC42 (Abcam), ZO1 (33-9100, Zymed); PAR6 (sc-14405, Santa Cruz), Occludin (353197a Zymed), Phalloidin (R415 Invitrogen), CCSP (Santa Cruz), SP-C (AB3786, Chemicon), Beta Galactosidase (ab9631, Abcam), Biotinylated goat anti-rabbit secondary antibody (ZYMED company), Alexa Fluor 555 or 488 conjugated anti-mouse, rat or rabbit IgG secondary antibodies (Invitrogen).
+ Open protocol
+ Expand
3

Immunofluorescent Analysis of Tight Junctions

Check if the same lab product or an alternative is used in the 5 most similar protocols
After incubation, endothelial cells attached to the filter membranes were washed with PBS (Gibco, Germany) and fixed with a mixture of methanol/ethanol (2∶1) at room temperature for 20 min. Cells were washed and stained with antibodies recognizing different tight junction proteins (zonula occludens protein-1, occludin (both Zymed Laboratories, CA, USA), claudin-5 (Abcam, UK)) and the corresponding secondary antibodies (Alexa fluor 546; Molecular Probes, CA, USA). All antibodies were diluted in 1% bovine serum albumin (Roth, Germany) in PBS. Nuclei were stained with Hoechst 33342 dye (Sigma-Aldrich, USA). The filter membranes were embedded with GelMount (Biomeda, Natutec, Germany) and analyzed via fluorescence microscopy (Olympus IX71 with Delta Vision system, Applied Precision, USA).
+ Open protocol
+ Expand
4

Conjunctival Whole-Mount Imaging and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Freshly harvested whole-mount conjunctivae, with or without pre-application of a 2.5 μl eye drop of FITC conjugated OVA peptide (OVAp, 5 mg/mL, KareBay Biochem Inc, Monmouth Junction, NJ), to the ocular surface, were fixed in cold methanol and later stained as described using anti-CD11c and anti-CD11b (clone HL3, and clone M1/70, respectively, BD Biosciences, San Diego, CA) antibodies.44 Whole mounts of cornea and conjunctiva from young and aged mice (n =3 mice/group) were surgically prepared and fixed with cold methanol and stained with occludin (Zymed, San Francisco, CA) and Alexa-fluor 488-conjugated goat anti-rabbit antibody. The images were processed using NIS Elements 4.20 version (Nikon).
Digital confocal images were captured with a laser scanning confocal microscope (Nikon A1 RMP, Nikon, Melville, NY) wavelength 400–750 nm and one μm z-step. The images were processed using NIS Elements 4.20 version (Nikon, Garden City, NY).
Apical cell area in occludin-stained whole mounts was measured in digital images using NIS Elements as previously described.48 (link) At least 5–8 cells per image were randomly measured by a masked observer.
+ Open protocol
+ Expand
5

Western Blot Analysis of Protein Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein lysates were acquired using RIPA lysis buffer supplemented with both phosphatase and protease inhibitor cocktails (Life Technologies, Thermo Fisher Scientific brand, Waltham, MA, USA). Equal amounts (5 μg) of proteins in RIPA buffer were separated on 10% NuPage Bis-Tris gels (Invitrogen) and transferred to a PVDF membrane (Invitrogen). Antibodies used are as follows: E-Cad (BD), PTP1B (BD, Fisher Scientific brand, Waltham, MA, USA), pSrc529 (Abcam), claudin-1 (Zymed, San Francisco, CA, USA), occludin (Zymed), β-catenin (Biolegend, San Diego, CA, USA), FAK (Cell Signaling, Danvers, MA, USA), pFAK (Cell Signaling) GAPDH (Abcam) and actin (Abcam) were used. In Figures 1,4 and 5, secondary antibodies were horsesadish peroxidase-conjugated anti-mouse or rabbit (BD Scientific; Fisher Scientific brand, Waltham, MA, USA) used at dilution 1:10 000. The protein bands were visualized using enhanced chemiluminescence (ECL) system (Thermo Scientific, Waltham, MA, USA). In Supplementary Figure 4, secondary antibodies were mouse or rabbit IRDye (Li-Cor, Lincoln, NE, USA) used at 1:10 000 and protein bands were detected using the Odyssey Infrared Imaging System (Li-Cor) and then fluorescent images were converted to gray scale.
All western blots are representative of three separate experiments.
+ Open protocol
+ Expand
6

Immunofluorescence Staining of Cell Junctions

Check if the same lab product or an alternative is used in the 5 most similar protocols
To analyze immunofluorescence staining of cell junction proteins, embryos were fixed in 4% paraformaldehyde, followed by permeabilization in PBS containing 0.2% Triton X-100 for 1 h, and blocking in PBS containing 1% Bovine serum albumin and 0.05% Tween 20. The treated embryos were incubated overnight at 4°C with antibodies to either ADAM10 (sc-48400, Santa Cruz Biotechnology; Santa Cruz, CA, USA), CXADR (HPA003342, Sigma, St. Louis, MO, USA), TJP1 (ZO-1; 33–9100, Zymed, San Francisco, CA, USA), OCLN (Occludin; 33–1500, Zymed, San Francisco, CA, USA), CDH1 (E-cadherin; 610182, BD Biosciences, San Jose, CA), or CTNNB1 (β-catenin; sc-7963, Santa Cruz Biotechnology; Santa Cruz, CA, USA) that were diluted into blocking solution (1 in 100). After primary antibody incubation, the embryos were washed three times in PBS containing 0.05% Tween 20 for 10 min, and transferred to PBS containing Alexa-Fluor-488 diluted 1:200. Finally, the samples were stained with Hoechst 33342 (10 mg/mL in PVA-PBS) for 20 min. Before mounting, embryos were washed an additional three times, and mounted onto glass slides with Vectashield (94010, Vector Laboratories, Burlingame, CA). Each slide was examined using a confocal laser-scanning microscope (Zeiss LSM 710 META; Jena, Germany). At least 30 embryos were examined per group.
+ Open protocol
+ Expand
7

Immunofluorescence Imaging of Cell Junctions

Check if the same lab product or an alternative is used in the 5 most similar protocols
To examine tight and adherens junctions, polarized epithelial cells were fixed with 4 % paraformaldehyde for 20 min, permeabilized with 0.05 % Triton X-100 and washed three times with PBS. Cells were then incubated with rabbit mAb occludin (Zymed) and rabbit mAb E-cadherin (CSI) for 1 h at room temperature. Cells were washed and incubated for 25 min with secondary antibody DyLight 488 antimouse IgG (Vector), and cell nuclei were stained with DAPI. Cells were analyzed using a Nikon Eclipse E400 fluorescence microscope.
+ Open protocol
+ Expand
8

Immunohistochemical Analysis of Tight Junction Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
The vaginal tissue was placed in 4% paraformaldehyde fixative for 16 hours and then processed for washing and dehydration. The tissues were embedded in paraffin. Sections of 5 μm thickness were prepared for staining. Immunohistochemistry was performed by using an immunoperoxidase procedure (Vector ABC Kit; Vector Laboratories, Burlingame, CA, USA). The tissue sections were deparaffinized in xylene, dehydrated in a graded series of ethanol, rinsed twice in phosphate-buffered saline (PBS), and then treated with 3% H2O2 in 60% methanol for 30 minutes to quench endogenous peroxidase activity. After washing twice (5 minutes) in PBS, the sections were incubated for 12 to 14 hours with antibodies to ZO-1 (1 : 200, Invitrogen), occludin (1 : 200, Zymed), and claudin-1 (1 : 200, Invitrogen) in PBS with 0.3% bovine serum albumin. For a negative control, the sections were incubated in PBS containing 5% normal goat serum only. The sections were then rinsed 3 times in PBS and incubated sequentially for 30 minutes each with the biotinylated secondary antibody and the ABC reagent. The sections were incubated for 5 minutes with a peroxidase substrate solution (diaminobenzidine). Finally, the tissue sections were examined and photographed under a light microscope.
+ Open protocol
+ Expand
9

Protein analysis of rat ileums

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was extracted from rat ileums, and the concentration of total protein was determined by BCA Protein Assay kit (TransGen, Beijing, China). Western blotting was performed with the following primary antibodies: ACSL4 (Abcam), GPX4 (Abcam), FTH1 (Abcam), ZO-1 (Abcam), occludin (Zymed Laboratories), claudin-1 (Santa Cruz Biotechnology), and claudin-2 (Zymed Laboratories). β-Actin (Sigma) was used as loading control. For protein quantification, the density of Western blot bands was measured by Image-Pro Plus 6.0 software (Media Cybernetics, Rockville, MD, USA).
+ Open protocol
+ Expand
10

Western Blotting of Cell Adhesion Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting was performed using antibodies to: HOXA5 (#sc-365784, Santa Cruz); CDH1 (#13–1700, Invitrogen); Claudin-1 (#71–7800), Claudin-7 (#34–9100), Occludin (#71–1500), ZO-1 (#33–9100) and CK18 (#180158Z) from Zymed; p21 (Santa Cruz); β-actin (Sigma-A2228).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!