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11 protocols using cd18 hpaf

1

Culturing HMEC-1 and PDAC Cell Lines

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Human microvascular endothelial cells (HMEC-1) were a kind gift from Dr Rakesh Singh (University of Nebraska Medical Center) and were maintained in 5% RPMI supplemented with L-glutamine. Human PDAC cell lines CD18/HPAF, BxPC3, Capan-1, and T3M4 were obtained from the American Type Culture Collection (ATCC, Manassas, VA, USA) and grown in recommended media supplemented with antibiotics (10% DMEM for CD18/HPAF, Capan-1 and T3M4 cells, and 10% RPMI for BxPC3 cells). These PDAC cells were maintained in a humidified, 5% CO2 atmosphere at 37 °C. All of these cell lines were tested mycoplasma free before conducting the experiments.
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2

Culturing Pancreatic Cancer Cell Lines

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CD18/HPAF, Capan-1 and MiaPaCa-1 pancreatic cancer cells and human immortalized pancreatic ductal epithelial cells hTERT-HPNE were purchased from ATCC and were maintained as per the ATCC recommendations and based on our previous publications [11 (link), 12 (link), 14 (link), 45 (link)]. The pan EGFR family members specific and EGFR specific inhibitors used in this study (Selleck Chemicals, TX, USA) were dissolved in either DMSO (canertinib and erlotinib) or in PBS (afatinib) and stored at −20°C as per the manufacturer's recommendation.
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3

Proteasome and Protein Synthesis Inhibition in Cancer Cell Lines

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Human cancer cell lines AsPC-1, Capan-1, CD18/HPAF, L3.6, HeLa, and SH-SY5Y were obtained from ATCC. HPNE is a line of primary human pancreatic ductal cells immortalized by human telomerase hTERT35 (link).
Proteasome inhibitor MG132 (EMD Biosciences) was dissolved in DMSO and cells treated at 10 μM56 (link),57 (link). Protein synthesis inhibitor CHX (Sigma-Aldrich) was dissolved in water and cells treated at 15 μg/ml58 (link).
Cytoplasmic and nuclear extracts were isolated using NE-PER™ Nuclear and Cytoplasmic Extraction Reagents (Thermo Fisher Scientific). Lamin A/C and α-tubulin were used as loading controls for nuclear and cytoplasmic extract, respectively59 (link).
Additional details of cell culture/treatment are described in Supplementary Materials.
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4

Establishment of Normal and Tumor-Derived Fibroblast Lines

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Normal human fibroblasts (NFs) and CAFs were derived from fresh surgically resected normal and pancreatic tumor tissues under approved Institutional Review Board (IRB) protocol. An in-house pathologist evaluated initial pathological diagnoses of normal pancreas and PC. The tissues were minced, and the fibroblasts were isolated by differential trypsinization and subsequently transfected with human telomerase reverse transcriptase (hTERT), as shown previously33 (link). All procedures performed in this study involving human participants followed the University of Nebraska Medical Center’s ethical standards and the 1964 Helsinki Declaration and its later amendments or comparable ethical standards.
The human pancreatic cancer cell lines (CD18/HPAF and BxPC3) were received from ATCC. BxPC3 and CD18/HPAF cells were cultured in DMEM medium, supplemented with 10% fetal bovine serum and antibiotics (100 units/mL penicillin and 100 mg/mL streptomycin). Cells were incubated in a humidified incubator at 37°C, supplied with 5% CO2. All the cell lines were free of mycoplasma (as determined by MycoAlertPlus Mycoplasma Detection kit (Lonza, Walkersville, MD) and pathogenic murine viruses. For cell line authentication, short tandem repeat (STR) tests were performed in Genomics Core Facility at the University of Nebraska Medical Center34 (link).
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5

Pancreatic and Mesothelial Cell Culture

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MIAPaCa, Capan-1, AsPC-1 and CD18/HPAF PC cell lines were obtained from ATCC, and grown in Dulbecco’s Modified Eagle’s medium (DMEM) containing high glucose (Hyclone, Thermo USA), supplemented with 10% (v/v) fetal bovine serum and 1% penicillin-streptomycin (HyClone, Thermo, USA) at 37 °C in a humidified atmosphere containing 5% CO2. Human mesothelial LP9/TERT-1 cells, an hTERT-immortalized cell line phenotypically and functionally resembling normal human peritoneal mesothelial cells, were obtained from Dr. James Rheinwald (Brigham and Women’s Hospital, Harvard Institute of Medicine, Boston, MA) and cultured as detailed previously [23 (link)].
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6

Pancreatic Cancer Cell Lines Protocol

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Human PC lines SW1990 (CVCL_0221), COLO357 (CVCL_1723), T3M4 (CVCL_4056), CD18/HPAF (CVCL_0313), and MIA PaCa-2 (CVCL_0428) were obtained from the ATCC. Cell lines were routinely authenticated using short tandem repeat profiling. SW1990, T3M4, COLO357, and MIA PaCa-2 cells were cultured in DMEM media with 10% FBS. NSCLC lines SW1573 (CVCL_1720), H2122 (CVCL_1531), and A549 (CVCL_W218) were maintained in 10% RPMI.
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7

Human Pancreatic Cell Lines Cultivation

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Human pancreatic cancer cell lines AsPC-1, CD18/HPAF and Capan-1 were obtained from the American Type Culture Collection (Manassas, VA) and maintained in Dulbecco's Modified Eagle's medium containing 10% fetal bovine serum. HPNE cells are primary human pancreatic ductal cells immortalized using hTERT, the catalytic subunit of human telomerase [57 (link)]. HPNE cells were maintained in Medium D medium, which contains 3 parts of high glucose DMEM (Life Technologies, Carlsbad, CA), 1 part of M3F (INCELL, San Antonio, TX), 5% fetal bovine serum and 100 ng/ml recombinant EGF (Life Technologies) [57 (link)].
Rac1 specific inhibitor NSC23766 [21 (link)] was obtained from Tocris Biosciences (Ellisville, MO). Experimental compounds were purchased from ChemBridge (San Diego, CA). All compounds were dissolved in DMSO.
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8

HER2 Knockdown in Pancreatic Cancer Cells

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CD18/HPAF and Capan-1 cells were procured from American Type Culture Collection [ATCC] (Manassas, VA, USA) and cell lines were propagated in a humidified atmosphere containing 5% CO2 at 37°C and cultured in Dulbecco's modified Eagle's medium supplemented with 10% fetal calf serum and antibiotics. HER2 was stably knockdown using HER2 sh-RNA (GAAACCTGGAACTCACCTAC) [which target N-terminal portion of HER2], (sh-HER2seq2-GCAGAGGATGGAACACAGCGGTGTGAGAA) [which target C-terminal of HER2] and (sh-HER2seq3-TGTTGGATGATTGACTCTGAATGTCGGCC) [which target C-terminal region of HER2] construct (pSUPER-Retro-sh-HER2) in HER2 expressing CD18/HPAF and Capan-1 cells by stable transfection method. Scramble control (sh-control) and pSUPER-Retro-sh-HER2 has been transfected into packaging cell Phoenix using Lipofectamine 2000 (Invitrogen, Carlsbad, CA, USA). After 48 h post transfection, the viral particles were collected and used to infect CD18/HPAF and Capan-1 cells. Pooled population of HER2 knockdown cells were obtained using antibiotic selection (Puromycin 4 μg/ml), and were further expanded to confluent levels to obtain stably transfected cells. The dual PI3K and mTOR inhibitor (NVP-BEZ235, LC laboratories, MA, USA) was dissolved in dimethyl sulfoxide (DMSO) and prepared as 10mM stock and stored at −20°C as per the manufacturer's recommendation.
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9

Pancreatic Cancer Cells, Drug Treatments, and Ferroptosis

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The human pancreatic cancer cell lines Capan-1, CD18/HPAF, Mia Paca-2, and T3M4 were obtained from American Type Culture Collection and cultured in DMEM with 7% heat-inactivated fetal bovine serum. Cells were carried out in a 5% CO2 incubator at 37 °C. Gemcitabine HCl was obtained from LC Laboratories (Woburn, MA, USA). Abraxane was a kind gift from Celgene (Summit, NJ, USA). Tin protoporphyrin IX dicholoride, zinc protoporphyrin, and ferrostatin-1 were obtained from Santa Cruz Biotechnology (Dallas, TX, USA). Erastin (a positive control for Ferroptosis) was purchased from Cayman Chemical (Ann Arbor MI).
The gemcitabine-resistant pancreatic cancer cell lines (T3M4, and MiaPaca-2) were a kind gift from the laboratory of Dr. Pankaj Singh, as described before [27 (link)].
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10

Characterization of PDAC Cell Lines

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Br404, Br451, and Br317 mouse PDAC cell lines were derived from KPC and KPCM4−/− mice pancreata and authenticated for KrasG12D and TP53R172H mutations. Mouse acinar cell line (266.6) and human PDAC cell lines, such as CD18/HPAF, Colo357, and AsPC-1, were procured from American Type Culture Collection (ATCC), authenticated by STR profiling and maintained/stored frozen as per standard protocol. The AsPC-1 cell lines expressing a control vector or the different MUC4β subunit constructs were prepared and maintained in antibiotic selection using 100 μg/ml of zeocin. On the other hand, CD18/HPAF cells with stable shRNA-mediated MUC4 KD were generated and maintained in 2 μg/ml of puromycin.
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