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M724001 2

Manufactured by Agilent Technologies
Sourced in Belgium

The M724001-2 is a laboratory equipment product from Agilent Technologies. It is designed for analytical measurement and testing purposes. The product's core function is to provide accurate and reliable data for research, development, or quality control applications. No further details or interpretation about the intended use of this product are provided.

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4 protocols using m724001 2

1

Immunohistochemical Analysis of Tumor Proliferation

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Tumors from control and treated groups previously grown in the animal model were fixed in 10% (v/v) buffered formalin for at least 48 h and routinely processed for paraffin embedding. Serial 4 μm-thick sections were cut for hematoxylin and eosin (H&E) stain and immunohistochemistry for the proliferation marker Ki-67. Briefly, the sections were incubated with anti-Ki-67 (M724001-2, 1:100, DAKO, Glostrup, Denmark) for 1 h at room temperature. Antigen retrieval was performed in citrate buffer, pH 6, according to the antibody manufacturer. Sections were then incubated with a Double stain System, Rabbit/Mouse (DAB+/Permanent Red) (DAKO, Glostrup, Denmark). Slides were examined by light microscopy in an Axioskop 2 Zeiss microscope (Carl Zeiss, Jena, Germany) and photographs acquired using a Nikon DS-L1 camera (Nikon, Tokyo, Japan) with 200× magnification. A minimum of 1000 cells were evaluated per slide.
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2

Immunohistochemical Profiling of Neural Tissue

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Tissue slices (350 µm-thick) designated for histological profiling were fixed for 2–4 days in 4% paraformaldehyde (PFA) in phosphate-buffered saline (PBS) at 4 °C and transferred to PBS, 0.1% sodium azide for storage at 4 °C. Slices were then cryoprotected in 30% sucrose, frozen and re-sectioned at 30 µm using a sliding microtome (Leica SM2000R). Sections were stored in PBS with azide at 4 °C in preparation for immunohistochemical and Nissl staining. Specific probes (vendor, dilution) used were: Neu-N (Millipore, MAB377, 1:2,000); SMI-32 (Biolegend, 801704, 1:2,000); GFAP (Millipore, MAB360, 1:1,500); parvalbumin (Swant, PV235, 1:2,000); IBA1 (Wako 019-19741, 1:1,000); Ki-67 (Dako M724001-2, 1:200). Full immunohistology protocol details available at http://help.brain-map.org/download/attachments/8323525/CellTypes_Morph_Overview.pdf?version=4&modificationDate=1528310097913&api=v2
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3

Histological Analysis of Brain Regions

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Brains were microtomed at 4 µm thickness from anterior to posterior. A set of 5 serial coronal sections at 100 µm intervals was taken at each of the following two levels. The first level started at the medial septal nucleus and second at the hippocampal formation. Supplementary Fig. 3 illustrates the regions of interest. Sections were placed onto poly-L- lysine coated slides (Sigma-Aldrich, Bornem, Belgium). Staining was done with Cresyl Violet (C5042-10G, Sigma-Aldrich, Overijse, Belgium) and the primary antibodies used included mouse monoclonal anti-NeuN antibody (MAB377, Millipore, Billerica, MA, USA), anti-NG2 chondroitin sulfate proteoglycan antibody (MAB5384, Millipore, Billerica, MA, USA), mouse monoclonal anti-glial fibrillary acidic protein antibody (GFAP) (G6171, Sigma-Aldrich, St Louis, MO, USA), mouse monoclonal anti-human Ki67 (M724001-2, Agilent, Diegem, Belgium), mouse monoclonal anti-synaptophysin (Sy38, ab8049, Abcam, Cambridge, UK). The secondary antibody was Alexa Fluor® 488 goat anti-mouse conjugate (Invitrogen). Degenerating nuclei were visualized by a terminal deoxynucleotidyl transferase dUTP nick end labelling (TUNEL) method for fluorescent in situ end labelling of double-stranded DNA fragmentation (Apoptag S7110; Millipore, Billerica, MA, USA). Sections were counterstained with Hoechst 33342 (Sigma-Aldrich, Bornem, Belgium).
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4

Perfusion Fixation and Brain Tissue Analysis

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On day 1 or day 56, animals were transcardially perfusion fixated after ketamine/xylazin sedation (ketamine (35 mg/kg IM) and xylazin (6 mg/kg IM), XYL-M®; VMD, Arendonk, Belgium). Brains were extracted, paraffin embedded and serially sectioned at four µm every 50µm as described before 19 . Sections were stained with Cresyl Violet (C5042-10G, Sigma-Aldrich, Overijse, Belgium), mouse monoclonal anti-human Ki67 (M724001-2, Agilent, Diegem, Belgium), mouse monoclonal anti-synaptophysin (Sy38, ab8049, Abcam, Cambridge, UK) and a terminal deoxynucleotidyl transferase dUTP nick end labelling (TUNEL) method for fluorescent in situ end labelling of double-stranded DNA fragmentation (Apoptag S7110; Millipore, Billerica, MA, USA). Four relevant brain areas were evaluated, i.e. the prefrontal cortex, caudate nucleus, hippocampus and thalamus. Further details and quantification methods can be found in Supplement4.
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