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1

Gastric Antrum Protein Expression Analysis

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After the animals were euthanized, the antrum was collected and stored immediately at −80°C. Total protein was extracted from gastric antrum homogenate, and the concentration of protein was determined using an enzyme-linked immunosorbent assay at 562 nm. The protein sample was boiled, and then equivalent amounts of protein were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) using 8% or 12% gels. The proteins were transferred onto a polyvinylidene fluoride (PVDF) membrane. TBS-T buffer (Tris buffer saline, 0.1% Tween) containing 5% BSA was used to block the membrane at room temperature for 60 minutes. Then, the membrane was incubated with the primary antibodies at 4°C overnight. Horseradish peroxidase (HRP) conjugated secondary antibodies were then incubated with the membranes at room temperature for 60 minutes. The gray values of the immunoreactive protein bands were quantified using ImageJ software (NIH, Bethesda, MD, USA). The antibodies used included anti-PGP9.5 (rabbit, 1 : 1000, Abcam, Cambridge, UK), anti-nNOS (rabbit, 1 : 1000, Abcam), anti-ChAT (rabbit 1 : 1000, Abcam), anti-GAPDH (1 : 1000, Cell signaling Technology, Danvers, MA, USA), and anti-Vinculin (1 : 2000, Abcam, Cambridge, UK) antibodies.
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2

Comprehensive Immunocytochemistry Assay

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Cells were washed once with 1 × PBS and fixed in 4% paraformaldehyde (Leagene) for 15 min at room temperature. After washing three times with 1 × PBS, cells were permeabilized with 0.5% Triton X-100 in 1 × PBS for 15 min, washed three times with 1 × PBS, and blocked with 10% goat serum for at least 30 min. Then, all primary antibodies were diluted in 1 × PBS and incubated cells overnight at 4°C. Primary antibodies were anti-Nestin (Millipore, 1:100, rat), anti-Sox2 (abcam, 1:100, mouse), anti-Tuj1 (Santa cruz, 1:100, mouse), anti-NeuN (abcam, 1:300, rabbit), anti-GFAP (Santa cruz, 1:100, rabbit), anti-olig2 (Proteintech, 1:1000, rabbit), anti-TH (Santa cruz, 1:100, rabbit), anti-ChAT (abcam, 1:100, rabbit), anti-GABA (sigma, 1:100, mouse), anti-Nav 1.7 (abcam, 1:100, mouse), anti-COL1A1 (Bioss, 1:400, mouse), anti-Collagen IV (abcam, 1:250, rabbit), and anti-Oct4 (Bioss, 1:400, rabbit). Next, cells were washed three times with 1 × PBS and incubated with secondary antibodies FITC (bioss, 1:100) or Cy3 (cwbio, 1:100) for 30 min at room temperature, followed three 5 min-washed with 1 × PBS. The nuclei were stained with DAPI (BestBio, 1:100) for 15 min.
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3

Western Blot Analysis of Muscle Proteins

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Muscle lysates were extracted by using radioimmunoprecipitation assay lysis buffer (150 mM NaCl, 1% NP‐40, and 50 mM Tris). Proteins were separated on sulfate polyacrylamide gel electrophoresis, then transferred to polyvinylidene difluoride membranes (Millipore), which were blocked in 5% bovine serum albumin at room temperature for 1 h, and then blots were incubated with the primary antibodies anti‐NRIP (Novus, Littleton, CO, USA 1:2000), anti‐ChAT (Abcam, 1;1000), anti‐slow myosin (Abcam, 1:2000), anti‐MyHC (Abcam, 1:1000), anti‐myogenin (SantaCruz, Santa Cruz, CA, USA 1:1000), anti‐Flag (Abcam, 1:2000), and anti‐GAPDH (AbFrontier, Seoul, Korea 1:5000) diluted in blocking buffer at 4°C overnight. After washing blots with 1 × TBST buffer, blots were then incubated with HRP‐conjugated secondary antibody at room temperature for 1 h. After a serial wash with TBST buffer, protein expression was detected by using an ECL western blot detection system (GE Healthcare Life Sciences, Chicago, IL, USA).
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4

Comprehensive Immunostaining Protocol for Neuronal Markers

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In this study, the following primary antibodies were used: anti-MAP2 (Encor, CPCA-MAP2), anti-LC3A (Cell Signaling, 4599), anti-ChAT (custom made by Abcam in rat using the same epitope as ab181023), anti-Synaptophysin (Abcam, ab14692), Homer1 b/c (Synaptic Systems, 160 025), anti-LAMP1 (Invitrogen, MA1-164), anti-cleaved caspase 3 (Cell Signaling, 9661), anti-ubiquitin (Abcam, ab7254), anti-C9orf72 (Genetex, GTX632041, anti-β-actin (Sigma-Aldrich, A5441), anti-RagC (Cell Signaling, 9480), anti-FLCN (Proteintech, 11236-2-AP), anti-NPRL2 (Cell Signaling, 37 344).
For western blot experiments, we used HRP-conjugated anti-Mouse purchased from DAKO.
For immunostainings, the following secondary antibodies from ThermoFisher Scientific were used: goat anti-Chicken DyLight 350 (SA5-10069), goat anti-Mouse Alexa Fluor® 488 (A-11001), goat anti-Rabbit Alexa Fluor® 488 (A-11008), goat anti-Mouse Alexa Fluor® 568 (A-11004), goat anti-Rabbit Alexa Fluor® 568 (A-11011), goat anti-Chicken Alexa Fluor® 647 (A32933), goat anti-Mouse Alexa Fluor® 647 (A-21235), goat anti-Rabbit Alexa Fluor® 647 (A-21244).
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5

Immunocytochemical Staining of Neuronal Markers

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Cells or sections were fixed with 4% paraformaldehyde (PFA) for 30 min, permeabilized with and blocked with 10% normal goat containing 0.3% Triton X-100 and 1% bovine serum albumin for 2 h, and then incubated with primary antibody overnight at 4 °C. On the next day, cells were incubated with secondary antibodies at room temperature for 2 h. Cell nuclei were counterstained with Hoechst 33342 (1:1000 dilution; Pierce). Primary antibodies included anti-Tuj1 (1:1000 dilution; Millipore), anti-NeuN (1:200 dilution; Abcam), anti-ChAT (1:1000 dilution; Abcam), and anti-Osbpl2 (1:1000 dilution; LifeSpan BioSciences).
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6

Extracellular Vesicle Protein Profiling

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Proteins were extracted by ultrasonication with radioimmunoprecipitation assay lysis buffer containing proteinase inhibitor. Equivalent amounts of protein lysates were loaded into each lane, separated by 10% SDS-PAGE, then transferred to 0.2 mm polyvinylidene fluoride membranes, and sealed with 5% skim milk for 2 h. After incubating with primary antibodies overnight at 4 °C, the membranes were incubated with horseradish peroxidase–linked secondary antibodies for 2 h. The immunoreactive bands were viewed by enhanced chemiluminescence reagents (Bio-Rad). Primary antibodies included anti-CD9 (1:1000 dilution; Abcam), anti-CD63 (1:1000 dilution; Abcam), anti-Tsg101 (1:1000 dilution; Abcam), anti-Tuj1 (1:1000 dilution; Millipore), anti-ChAT (1:1000 dilution; Abcam), and anti-β-actin (1:1000 dilution; Abcam).
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7

Neuronal Differentiation Protein Analysis

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After 30 days of differentiation, the cells were washed twice with ice-cold PBS and lysed in cell lysis buffer. Samples were vortexed three times, with a ten minute interval each time, and then centrifuged at maximum speed for 15 minutes at 4 °C. The supernatants were retained and their protein concentrations were measured using the DC™ Protein Assay (Bio-Rad). Samples were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) on 10 % SDS-PAGE gels under reducing conditions. The proteins were then transferred to polyvinyldifluoride membranes and blocked with 5 % BSA in TBS with 0.1 % Tween-20. After which, the membranes were blotted with the desired primary antibodies overnight at 4 °C. Primary antibodies used were: anti-ChAT (1:1000; Abcam), anti-Gapdh (1:5000; Cell Signaling), and anti-Tuj1 (1:1000; Abcam). On the following day, the membranes were washed thrice with TBS with 0.1 % Tween-20 and blotted with the secondary antibodies -IgG-horseradish peroxidase conjugates (GE Healthcare). For detection of immunoreactive bands, ECL Western blotting substrate (Thermo Scientific Pierce) was used. For quantification of Western blot bands, the Gel Analyzer function in ImageJ was used.
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