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347 protocols using μct40

1

Rabbit Maxillary Bone Regeneration Analysis

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The rabbit midface was removed en bloc and excess soft tissue and bone were dissected. The maxillae were dehydrated in a series of ethanol solutions (70–100% EtOH) and embedded in a methyl methacrylate resin. After embedding, rabbit maxillae were scanned using micro-computed tomography (μCT 40, Scanco Medical, Basserdorf, Germany) with an 18 μm slice resolution. Data were exported in DICOM format, imported into Amira 6.3 software (Visage Imaging GmbH, Berlin, Germany), and analyzed for bone regeneration, scaffold degradation/resorption, and gross changes in bone morphology.
Areas of new bone were distinguished from scaffold structure by image thresholding54 . Regions of bone, scaffold, and scaffold interstices (empty space/soft tissue infiltrate) were isolated and cumulatively added to a total volume of 100% (Figure 5). A single, blinded investigator completed all microCT analysis.
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2

Trabecular Bone Analysis of Distal Femur

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Femurs were harvested at the indicated time point and fixed with 10% neutral buffered formalin for 48 hours at 4 ºC and then placed in 70% ethanol. Trabecular bone was analyzed using a μCT40 (Scanco Medical, AG Bassersdorf, Switzerland) and Scanco software. Images were acquired at 55 kVp and 145 mA with an isotropic voxel size of 12 μm and an integration time of 250 ms with 1000 projections collected per 360º rotation. Images were reconstructed, filtered (sigma = 0.8; support = 1.0), and thresholded at 200 mg HA/ccm. Trabecular bone at the distal femur was manually contoured every 10 slices starting 30 slices proximal to the growth plate and advancing proximally for 100 slices such that trabeculae were included, and cortical bone was excluded in accordance with American Society for Bone and Mineral Research (ASBMR) guidelines.68 (link) Sections between manual contours were automatically contoured.
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3

Resolvin D2 Mitigates Experimental Periodontitis

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Experimental periodontitis was induced as described previously (27 (link)). In brief, mice were treated with trimethoprim (0.16 mg/mL) and sulfamethoxazole (0.8 mg/mL) solution (Resprim; Teva Pharmaceutical Industries) in the drinking water for 10 days, followed by 3 days without antibiotics. 1 × 109 colony-forming units of P. gingivalis 53977 were introduced via oral gavage, three times at 2-day intervals in 200 µL of 2% (wt/vol) carboxymethylcellulose (CMC) solution (Sigma). Control mice were treated with CMC 2% vehicle alone. The Pg + RvD2 group was treated with three doses of 0.5 µg RvD2 (Cayman Chemical) in a total volume of 150 µl of sterile saline solution intraperitoneally (i.p.) followed by six intraperitoneal doses of 0.1 µg of RvD2 over the next 2 weeks (Figure 1A). The Pg group received 150 µl of sterile saline solution i.p. in the same regimen as the Pg + RvD2. Control mice received 3 oral gavages of 2% CMC 2 days a part. 6 weeks later, mice were euthanized, and the hemi-maxillae were harvested and scanned using micro-computed tomography (μCT) (μCT 40, Scanco Medical, Switzerland) for alveolar bone loss quantification.
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4

Quantifying Mandibular Bone Microarchitecture via μCT

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μCT has been used extensively to quantify the 3-dimensional microarchitecture of trabecular bone.36 (link)–38 The hemi-mandibles in 70% alcohol were placed in the μCT specimen holder and sealed using styrofoam blocks to stabilize the bones. Bone mineral volume and microarchitecture of mandibular body and condyle were evaluated using the μCT (μCT 40, Scanco Medical, Basserdorf) with a resolution of 20 μm. One hundred and fifty μCT slices were imaged over the areas of interest using 55kVp energy and 145 μA current. The integration time utilized was 200 ms and total scanning time of 21.1 minutes. The μCT slices were images which were filtered using a constrained three-dimensional Gaussian filter and binarized using a fixed threshold of 240. 3-D construction of the condylar cross sections were made with a reference point set approximately 100 slices from condyle tip and body of mandible, 25 slices mesial to the first molar. The 3D structural parameters (BV/TV and porosity) were obtained using Sigma 1.2, Support 1.0, software provided by the manufacturer.
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5

Microstructural Analysis of oim Mouse Femurs

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Femurs were harvested from transplanted female oim mice and frozen in PBS soaked gauze at −20°C (for later mechanical testing), or fixed in 10% formalin for subsequent histology. Femurs were imaged by microcomputed tomography (μCT40, Scanco Medical AG) at 55 kV at a 16 μm voxel size. Cortical morphometry near the mid-diaphysis was measured in a 600 μm span referenced 5.1 mm from the growth plate. Segmentation of bone was performed in conjunction with a constrained Gaussian filter to reduce noise, applying a calibrated hydroxyapatite-equivalent density threshold of 740 mg/cm3 for cortical bone. Femurs with fractures were excluded from the microCT analysis (n=9 sham, n=10 transplanted intact femurs were analyzed). One sample was excluded due to poor injection noted during transplantation.
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6

Quantitative Craniofacial Morphometry in Mice

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A total of 16 sex-matched littermate paired mice (P900L n = 8, 4 male, 4 female; WT n = 8, 4 male, 4 female) at 30–35 weeks of age were fixed with intracardiac perfusions of 4% paraformaldehyde. Whole mouse heads were scanned using a Scanco μCT40 machine at the Musculoskeletal Research Center at Washington University in St. Louis. Image processing was performed as previously described.9 (link),73 (link) Briefly, CT images were converted to 8-bit and surface reconstructions were acquired in Avizo (http://www.vsg3d.com/). 35 landmarks were collected from surface reconstructions of the cranium and mandible using Avizo. Principal components were identified from generalized Procrustes analysis in Geomorph package in R and Morphologika software as previously described.73 (link) To identify specifically altered linear distances, landmark coordinates were natural log-transformed and analyzed with linear regression using Euclidean Distance Matrix Analysis (EDMA).
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7

Microcomputed Tomography Imaging of Spine

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Scans of fixed spine were performed on a μCT40 instrument (Scanco Medical, Brüttisellen, Switzerland) using the following parameters: energy/intensity: 70 kVp, 57 µA, 4 W; image matrix: 2048x2048 pixels, voxel size: 20 µm. Segmentation thresholds of 190 and 280 and a Gaussian filter (σ = 0.8, support of one voxel) were used for image analysis.
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8

Quantifying Bone Microarchitecture and Perforations

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Quantity and quality of bone across the distal femoral, proximal tibial metaphysis, and L5 vertebrae were measured ex vivo using X-ray micro-computed tomography (μCT40; Scanco Medical; Wayne, PA, USA). X-ray source voltage was set to 55kVp, current set to 145μA, integration time was 300ms, and voxel size was 10μm. Parameters measured were as follows: trabecular bone volume fraction (Tb.BV/TV), cortical bone volume fraction (Ct.BV/TV), and the number of transcortical perforations. Starting 700μm distal to the epiphyseal growth plate in the tibia and 700μm proximal to the growth plate of the femur, 1 000μm of metaphyseal bone was evaluated. A 500μm uniform core of trabecular bone, taking care not to include primary spongiosa, was evaluated within the vertebral body of the L5 vertebrae. Thresholds for each slice were set exclusively to separate cortical and trabecular bone using an automated script (55 (link)). Reconstructed solid 3D images were then used to quantify bone microarchitecture and the number of perforations that extended from the periosteum to the endosteal surface. Digitally slicing the 3D reconstructed image along the sagittal and transverse axes revealed perforations, and these were included if they breached the periosteal surface.
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9

Mandibular Bone Microarchitecture Analysis

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The fixed mandible samples were scanned by μCT (μCT 40, SCANCO MEDICAL, Brttisellen, Switzerland; voltage = 70 kV; current = 113 μA; voxel size = 15 μm; threshold = 200). The microarchitecture of the newly generated bone (defined as a 5 × 5 × 1.5 mm3 volume) in the mandibular defect was evaluated. Bone volume/total tissue volume (BV/TV), trabecular thickness (Tb.Th), bone mineral density (BMD), and trabecular number (Tb.N) were calculated [23 (link)].
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10

Micro-CT Analysis of Regenerated Bone

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Twelve weeks after surgery, the morphology of the regenerated bone in calvarial defects was assessed using a micro CT system (μCT‐40, Scanco Medical, Bassersdorf, Switzerland). The micro CT scanning settings were as follows: 1024 × 1024 pixel matrix and 20 mm slice thickness. After scanning, the micro CT images were processed using a nominal threshold value of 300 as previously reported 20, and a three‐dimensional (3D) histomorphometric analysis was performed automatically. The ratio of bone volume to tissue value was used for comparison parameters in this study.
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