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69 protocols using hrp conjugated secondary antibody

1

Quantifying Liver Protein Expression

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Whole proteins from liver tissues were extracted using a protein extraction kit (Nanjing KeyGen Biotech Co., Ltd., Nanjing, China). 50 μg (7.2 μg/μL, 7 μL) of proteins for each sample were resolved by 10% SDS-PAGE, transferred to PVDF membrane (Merck Millipore, United States), and blocked with 5% non-fat dry milk before incubated with anti-collagen I (1:1,000, Abcam), anti-α-SMA (1:4,000, Abcam) or anti-HSC70 (1:1,000, Santa Cruz Biotechnology, United States) overnight at 4°C. Then, the blots were washed and incubated with HRP-conjugated secondary antibodies (1:20,000, ZSGB-BIO) at room temperature for 2 h. Protein bands were visualized by chemiluminescence using Western Blotting Luminol Reagent (Merck Millipore), and densitometric analyses were made using Quantity One software (v4.6.2). Protein levels were normalized against HSC70 and were shown as fold changes relative to the control group.
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2

Protein extraction and western blot

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Total protein was extracted using 2% SDS lysis buffer including protein phosphatase inhibitor (Applygen, Beijing) and heated for 10 min. Protein samples were separated by 8% (v/v) SDS-PAGE gels and transferred onto nitrocellulose membranes (Millipore, Ireland). After blocking in 5% (w/v) Albumin Bovine-V (BSA-V, Solarbio, China) for 1 h at room temperature, the protein bands were incubated with primary antibodies at a dilution ratio of 1:1000 overnight at 4 °C. The primary antibodies contain anti-GAPDH (FL-335; Santa Cruz Bio technology), anti-TGM2 (Proteintech), anti-PD-L1 (Proteintech), anti-STAT3 (CST) and anti-Phospho-STAT3 (Ser705, CST), anti-Akt (CST), and anti-Phospho-Akt (Ser473, CST), anti-P65 (Abcam) and anti-Phospho-P65 (Ser536, Abcam). The protein bands were incubated in HRP-conjugated secondary antibodies (Zsbio, China, 1:5000) at room temperature for 1 h.
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3

Western Blot Analysis of Protein Expression

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Total protein was extracted from human tissues and cell lines using protein extraction buffer containing a 1% protease inhibitor cocktail (Targetmol, Shanghai, China) and a phosphatase inhibitor (Cat. No. 4906845001, Roche, Basel, Switzerland). The lysate was centrifuged at 4°C at 14,000 rpm for 15 min, and proteins were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride membranes (PVDF) (Millipore, Massachusetts, USA). After being blocked with 5% skim milk for 1 h at room temperature, the membranes were incubated at 4°C overnight with primary KLF4 (ab215036, Abcam, San Francisco, USA), p-JNK (sc-293136, Santa, California, USA), and JNK (sc-7345, Santa, California, USA) antibodies and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (TA-08, ZSGB, Beijing, China) antibodies. After washing with Tris-buffered saline with 1% Tween-20 (TBST), the membranes were incubated with HRP-conjugated secondary antibodies (ZSGB-Bio, Beijing, China) for 1 h at room temperature. The blots were visualized using enhanced chemiluminescence reagents (ECL) detection (Amersham Biosciences Fairfield, CT, USA).
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4

Protein Expression Analysis in Hepatic Stellate Cells

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Proteins samples were extracted from primary HSCs and LX‐2 cells using RIPA lysis buffer (Beyotime, China). Equal amounts of proteins were separated by 10% SDS‐PAGE and transferred onto PVDF membranes (Millipore, USA). The membranes were blocked with 5% skim milk for 1 hour at room temperature and then incubated with primary antibodies overnight at 4°C. The following antibodies were used for Western blotting: β‐actin (1:500; Bioss, China), Col1α1 (1:500; Bioss), α‐SMA (1:500; Bioss), PLK1 (1:1000; Abcam), Bax (1:800; Abcam), Bcl‐2 (1:800; Abcam), cleaved caspase‐3 (1:1000; Abcam), β‐catenin (1:500, Bioss), c‐Myc (1:500; Bioss) and Cyclin D1 (1:500; Bioss). The membranes were incubated with HRP‐conjugated secondary antibodies (1:10000; ZSGB‐Bio, China) for 60 minutes at room temperature. The protein bands were detected with a chemiluminescent (ECL) system (Bio‐Rad, USA) and analysed using IMAGE J software (National Institutes of Health, USA).
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5

Western Blot Analysis of Oxidative Stress Markers

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Proteins were obtained and homogenized in the RIPA buffer. Equivalent amounts of protein (30 μg) were loaded and separated by 10% SDS-PAGE gels, then transferred to polyvinylidene difluoride (PVDF) membranes (0.45 mm). The membranes were washed in Tris-buffered saline containing 0.05% Tween-20 (TBST) followed by blocking for 1 h using 5% nonfat milk in TBST at room temperature, then incubated at 4°C overnight with the following primary antibodies: monoclonaln antibody to Prdx6 (1:1000; ab133348, Abcam, Cambridge, MA, USA), rabbit polyclonal antibody to TLR2 and TLR4 (1:400, BA1716/BA1717, Boster Biological Technology, China), rabbit polyclonal antibody to NF-κB (1:1000; sc-109, Santacruz, CA, USA), rabbit monoclonal antibody to iNOS (1:500, bs0162R, Bioss, China), rabbit monoclonal antibody to COX-2 (1:500, 55070-1-AP, Proteintech, China,) and mouse monoclonal antibody to β-actin (1:10,000, D110007-0100, Songon Biotech, China). The next day, the blots were washed and incubated for 1 h with respective HRP-conjugated secondary antibodies (ZSGB-BIO, Beijing, China; dilution 1:3000) at room temperature. Finally, the protein was visualized using the ECL kit (Millipore, Temecula, CA, USA). The results were quantified using Quantity One 1-D analysis software, and β-actin was used as the internal control. Three independent experiments were taken.
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6

Western Blotting for Protein Analysis

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We performed western blotting according to a standard protocol. Total cell lysates were extracted using 2% SDS lysis buffer with a protein phosphatase inhibitor mix (Applygen, Beijing), and 30 μg of total protein was prepared for electrophoresis through 8% or 12% (v/v) SDS–PAGE gels. After electrophoresis, the separated protein bands were transferred onto nitrocellulose membranes (Millipore, Ireland) and were blocked in 5% (w/v) Albumin Bovine-V (BSA-V, Solarbio, Beijing) for 1.5 h at room temperature. The primary antibodies used were as follows: anti-GAPDH (FL-335; Santa Cruz Biotechnology), anti-CD59 (HPA026494, Sigma-Aldrich), anti-CD163 (ab182422, Abcam), anti-arginase 1(Arg-1) (16001-1-AP, Proteintech), anti-IFN-γ (ab9657, Abcam), anti-iNOS (ab3523, Abcam), anti-IL-6 (ab6672, Abcam), anti-STAT3 (D1B2J, Cell Signaling Technology), and anti-phospho-Stat3 (Ser727, Cell Signaling Technology). The quality of loading and transferring was assessed by immunostaining with the anti-GAPDH antibody. The membranes were incubated with the primary antibodies at a dilution ratio of 1:1000 overnight at 4 °C. After washing three times in TBST, the membranes were incubated in 1:5000 HRP-conjugated secondary antibodies (Zsbio, Beijing) at room temperature for 1 h. Finally, the membranes were washed three times in TBST and visualized using an ECL Kit (Applygen, Beijing).
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7

Western Blot Analysis of Intestinal Proteins

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Intestinal tissue and cell protein were extracted according to the manufacturer’s instructions (KeyGEN Biotech, Nanjing, China). Western blotting was performed with primary antibodies against nurr1, p21 (Abcam, Cambridge, UK), ZO-1, occludin (Proteintech, Wuhan, China), and β-actin (ZSGB-BIO, Beijing, China) and horseradish peroxidase (HRP)-conjugated secondary antibodies (ZSGB-BIO, Beijing, China). Protein levels were analyzed using Gel-Pro Analyzer Version 4.0 (Media Cybernetics, MD, USA).
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8

Immunohistochemical Analysis of Tumor Markers

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Serial sections at 4 μm thickness were obtained from paraffin-embedded samples. Sections were incubated with rabbit anti-human UBN2 (1:100 dilution; BD Biosciences), mouse anti-human Ki-67 (1:200 dilution, Cell Signalling Technology, MA, USA) and mouse anti-human Cleaved Caspase-3 (1:200 dilution, Abcam, USA) overnight at 4°C after antigen retrieval and the block of non-specific binding. The sections were incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies (ZSGB, Beijing, China). Expression was visualized, and further independently scored based on the percentage of positively stained tumor cells by two observers.
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9

Protein Expression Analysis in SGC-7901 Cells

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SGC-7901 cells (5×105) were seeded in 6-well plates and transfected with small interfering RNAs (siRNAs). After 24 h, the cells were harvested and lysed in radioimmunoprecipitation assay buffer (Roche Diagnostics, Basel, Switzerland). Total proteins were measured using a BCA kit (Thermo Fisher Scientific, Inc.), and 20 µg was loaded for 12% SDS-PAGE and separated, followed by transferred onto polyvinylidene difluoride (PVDF) membranes and blocked in PBS containing 3% bovine serum albumin at room temperature for 1 h. Anti-F cyclin D1 rabbit (dilution, 1:500; cat. no. 2978), anti-cyclin E1 mouse (dilution, 1:500; cat. no. 4129) and anti-GAPDH rabbit (dilution, 1:1,000; cat. no. 5174) antibodies (Cell Signaling Technology, Inc., Danvers, MA, USA) were incubated at 4°C overnight. The goat-anti-rabbit (cat. no. ZB-2301) or goat-anti-mouse (cat. no. ZB-2305) HRP-conjugated secondary antibodies (1:10,000; ZSGB-BIO, Beijing, China) were incubated at room temperature for 1 h. Finally, the PVDF membranes were visualized using SuperSignal West Dura Extended Duration Substrate kit (Thermo Fisher Scientific, Inc.).
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10

Antibody Sourcing and Validation

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The anti-His antibody was purchased from MBL (Nagoya, Japan). Anti-MAGI3, anti-Cyclin D1 and anti-GFAP antibodies from Abcam (Cambridge, UK); Anti-β-catenin and anti-GFP antibodies from Cell Signaling Technology (Beverly, CA); Anti-Flag M2 antibody and anti-Flag M2 affinity gels from Sigma (St Louis, MO); Anti-β-actin, anti-GAPDH and HRP-conjugated secondary antibodies from ZSGB-BIO (Beijing, China).
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