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Binding buffer

Manufactured by Merck Group
Sourced in United States

Binding buffer is a solution used in various laboratory applications, primarily in the purification and isolation of biomolecules such as proteins, nucleic acids, and other macromolecules. It is designed to create the appropriate conditions for the binding of the target molecule to a solid support or resin, facilitating the separation and purification process. The core function of a binding buffer is to maintain the stability and solubility of the biomolecule of interest during the binding step.

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28 protocols using binding buffer

1

Annexin V-FITC/PI Apoptosis Assay

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Apoptosis was determined by flow cytometry using Annexin V-fluoroisothiocyanate (FITC) and propidium iodide (PI) double staining. Cells were incubated with AgDT, then collected and washed with the binding buffer (Sigma-Aldrich) and then incubated in the working solution (100 μl binding buffer with 0.3 μl Annexin V-FITC) for 15 min in dark; the cells were then washed and resuspended with the binding buffer. PI was added immediately before flow cytometric analysis. In addition, to monitor temporal changes in the incidence of cell death in the live culture condition, Annexin V/PI or PI staining was also performed in situ as we described previously [22] .
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2

Apoptosis Assay for SU-DHL Cell Lines

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1.0% PI was added to the culture medium to monitor temporal changes in the incidence of cell death in the live culture condition. The PI-positive cells were imaged with an epi-fluorescence microscope equipped with a digital camera (Axio Obsever Z1, Zeiss, Germany)45 (link). Cell apoptosis was determined by flow cytometry using Annexin V-fluoroisothiocyanate (FITC)/PI double staining43 (link). SU-DHL-4 and SU-DHL-2 cells were collected, washed with binding buffer (Sigma-Aldrich, St. Louis, MO), and then incubated in working solution (100 μl binding buffer with 0.3 μl Annexin V-FITC and PI) for 15 minutes in dark.
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3

Quantifying Apoptosis via Flow Cytometry

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Apoptosis was determined by flow cytometry using Annexin V-fluoroisothiocyanate (FITC)/PI double staining37 (link). Cells were incubated with GA, then collected and washed with binding buffer (Sigma-Aldrich, St. Louis, MO), then incubated in working solution (100 μl binding buffer with 0.3 μl Annexin V-FITC) for 15 min in dark. Cells were washed and resuspended with binding buffer. PI was added just before flow cytometric analysis. Annexin V/PI staining was also performed as described but in situ. The double stained cells were also imaged with an inverted fluorescence microscope equipped with a digital camera (Axio Obsever Z1, Zeiss, Germany).
To monitor temporal changes in the incidence of cell death in the live culture condition, PI was added to the cell culture medium, and at the desired sequential time points, the cells in the culture dish were imaged with an inverted fluorescence microscope38 (link).
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4

Apoptosis Induction by UVB and Loliolide

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Apoptosis was analyzed by flow cytometry after different cell treatments. Cells were pretreated with or without loliolide (0–100 µM) and then further irradiated with UVB (30 mJ/cm2). For staining, cells were washed twice with cold PBS and resuspended in 1× binding buffer at a concentration of 106 cells/mL. Afterwards, 100 μL of suspension (105 cells) was transferred to E-tubes, 10 μL of propidium iodide and 5 μL of fluorescein isothiocyanate–Annexin V (Sigma-Aldrich Chemical Co.) were added, and cells were incubated for 15 min at room temperature in the dark. Finally, 400 μL of 1× binding buffer (Sigma-Aldrich Chemical Co.) was added and fluorescence was assessed using a Guava easyCyte flow cytometer (Millipore, Burlington, MA, USA).
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5

Apoptosis Detection by Flow Cytometry

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Annexin V-FITC and propidium iodide (PI) double-staining with flow cytometry was performed for cell apoptosis detection. In brief, 3×105 cells per well were plated onto 6-well plates, then grown overnight at 37 ˚C with 5% CO2 for 24 h. Post 48 h transfection as above, the cells were collected and centrifuged for 5 min at 1,000 rpm, then resuspended in 195 μL 1×Binding Buffer (Sigma-Aldrich, USA), followed by 5 μL Annexin V-FITC solution (Sigma-Aldrich, USA) was added per sample and incubated at room temperature without lighting for 10 min. After being centrifuged at 1,000 rpm for 5 min, the cells were resuspended in 190 μL 1×Binding Buffer, followed by 10 μL PI (Sigma-Aldrich, USA) was added per sample. Subsequently, the stained cells were detected and analyze by a BD FACSCanto II flow cytometer (BD, USA).
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6

Measuring Cell Apoptosis via Flow Cytometry

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HeLa and CaSki cell apoptosis was measured using fluorescein isothiocyanate (FITC)-conjugated Annexin V and propidium iodide (PI) (BD Pharmingen; Becton-Dickinson and Company, Franklin Lakes, NJ, USA). The cells were washed twice in cold PBS and then resuspended in Annexin V-binding buffer (BD Pharmingen; Becton-Dickinson and Company) at a concentration of 3×106 cells/ml. Additionally, 100 µl of the suspension was incubated with 5 µl Annexin V-FITC and 5 µl PI in dark at 37°C for 15 min. After gentle vortexing, the cells were incubated for 15 min at room temperature in the dark. Following the addition of 400 µl binding buffer (Sigma-Aldrich; Merck KGaA) to each tube, the cells were analyzed using FACSAria™ III Cell Sorter flow cytometer (BD Biosciences, San Jose, CA, USA) and analyzed using FlowJo V10 software (FlowJo LLC, Ashland, OR, USA).
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7

Detecting MPTP Opening Dynamics

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Fluorescent Calcein AM (Life Technology, New York, America; Cat.C3099 Lot: 1,311,548) and CoCl2 (Sigma, Lot: 232,696 No: BCBG0246V) markers were employed to detect the dynamic changes of MPTP opening using FC. At 4, 24, 48, 72, 96, and 120 h after infection, chick embryo caecal epithelial cells were harvested using 0.25% trypsin, rinsed in PBS, centrifuged at 600 g for 5 min, suspended in 200 μl of binding buffer (Sigma, California, America), and incubated with Calcein AM and CoCl2 (15 min, 37 °C, in the dark). Subsequently, 250 μl of binding buffer was added to the cells, and the mixture was subjected to FC analysis. Flow cytometry (American BD, FACSCalibur) was performed as previously described [21 ]. The results were analysed using CellQuest software. Fluorescent intensity reflects a change in MPTP opening [22 (link)].
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8

Apoptosis Analysis of Jurkat Cells

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For apoptosis analysis, Jurkat cells were treated with different concentrations of ex-LAC, and 0.1% Triton X-100 was added as a positive control. Following 48 h of incubation, all cells were washed using phosphate-buffered saline (PBS; Biochrom; Merck Millipore), resuspended in a binding buffer (Sigma-Aldrich) and stained with 5 µl Annexin V-fluorescein isothiocyanate (FITC) and 10 µl propidium iodide (PI), according to the manufacturer's protocol of the Annexin V-FITC Apoptosis Detection Kit (Sigma-Aldrich). Cells were incubated for 10 min in the dark, and immediately analyzed with FACSCalibur™ (BD Biosciences, San Jose, CA, USA). Live cells served as a negative control.
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9

Magnetic Particle-based Glycoprotein Isolation

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Three milligrams of epoxidized magnetic particles were added to 1 mL of prepared coupling buffer(Aladdin Crop, U.S.A) [9 (link)]. The sample was mixed well and placed on a magnetic separation rack. When it was observed that the magnetic particles were obviously adsorbed on the magnet, the supernatant was gently discarded. This step was repeated 3 times to clean the magnetic particles. After cleaning, 600 μL of prepared coupling buffer and 300 μg of SNA were added and shaken at 20 °C and 180 rpm. After the reaction time, the SNA-magnetic particle complex was washed. Then, 1 mL of preprepared blocking solution(Sigma-Aldrich Corp, U.S.A) was added to the cleaned SNA-magnetic particle complex, shaken for 1 h. Next, the blocked magnetic particle complex was washed with 1 mL of binding buffer(Sigma-Aldrich Corp, U.S.A) 3 times, 600 μL of the sample system were added, and the mixture was shaked 3 h at 25 °C, 120 rpm. After the reaction, the glycoprotein-magnetic particle complex was washed at least 6 times. After washing, 300 μL of elution buffer(Sigma-Aldrich Corp, U.S.A) were added to the system and placed on a shaker for 1 h, and the eluted solution was collected. We added 300 μL of elution buffer to the original system, repeated the steps, and collected the solution to obtain a total of 600 μL of glycoprotein solution.
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10

Assessing Cisplatin-Induced Apoptosis in A549/DDP Cells

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Transfected and untransfected A549/DDP cells (3.5×105 cells/ml) were seeded into 12-well plates and incubated with 0, 1.0 or 2.0 µg/ml DDP for 24 h. The A549/DDP cells were then washed with 1X PBS and resuspended in 100 µl binding buffer (Sigma-Aldrich; Merck KGaA, Darmstadt, Germany). Next, Annexin V-FITC and PI (Sigma-Aldrich; Merck KGaA) were added for 30 min at 37°C in the dark. Following dilution with 400 µl binding buffer, staining was analyzed within 1 h by flow cytometry. The fluorescence intensity (green, FL1-H; red, FL2-H) was measured using a FACSCalibur flow cytometer (BD Biosciences, San Jose, CA, USA). CellQuest Pro software 5.1 (BD Biosciences) was used for acquisition and analysis of data.
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