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27 protocols using β actin

1

Protein Expression Analysis in LX-2 Cells

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Total protein was isolated from LX‐2 cells using RIPA (Solarbio) and quantified using a BCA Protein Assay Kit (Solarbio). Then equal amounts of protein samples were separated on SDS‐PAGE and transferred to polyvinylidene difluoride membranes. The membranes were blocked with 5% skimmed milk for 60 minutes, and incubated with primary antibodies against CAPRIN1 (1:500; Proteintech), Cyclin D1 (1:1000; Bioss, Beijing, China), Cyclin E1 (1:1000; Proteintech), p‐RbS807 (1:1000; Bioss), TGF‐β2 (1:1000; Bioss), COL1A1 (1:1000; Bioss), α‐SMA (1:1000; Bioss), p‐Smad2ser467 (1:1000; Cell Signaling Technology, Trask Lane Danvers, MA), Smad2 (1:1000; Cell Signaling Technology), p‐Smad3S423/S425 (1:1000; Cell Signaling Technology), Smad3(1:1000; Cell Signaling Technology) and β‐actin (1:1000; Santacruz Biotechnology) at 4°C overnight. Goat anti‐rabbit IgG or goat anti‐mouse secondary antibodies (1:3000; Solarbio) were employed at 37°C for 60 minutes. The bands were visualized using electro‐chemi‐luminescence (ECL) Western Blotting Substrate (Solarbio). The protein expression was standardized to β‐actin and quantified using Gel‐Pro‐Analyzer software (Media Cybernetics, Rockville, MD).
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2

Validating miRNA Expression in Vascular Cells

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The miRNA expression was validated using RNA-tailing quantitative real-time PCR in accordance with the protocol of the all-in-one miRNA detection kit (Genecopoeia, Guangzhou, China). miR-3713, miR-4769-5p, miR-6832-5p, miR-4754, miR-134-5p, and miR-597 forward primer and universal adaptor PCR primer were obtained from Genecopoeia (Guangzhou, China). The primers of contractile markers, matrix metalloproteinases, and vascular development target genes in quantitative real-time PCR assay were listed in Table S1. For western blot assay, proteins were extracted from AoSMCs with different treatment and subjected to immunoblotting using antibodies against α-SMA, SM22α, STAT5B, ITGB1, or β-actin (1:1000, Abcam, Cambridge, MA, USA). β-actin was used as internal control, and Gel-Pro analyzer 4.0 software was applied in protein quantitative densitometric analysis (Media Cybernetics, Silver Spring, MD, USA).
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3

Quantitative Western Blot Analysis of Hippocampal Proteins

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Proteins were extracted from hippocampal tissues and quantified according to our previously described method [93 (link)]. After SDS-polyacrylamide gel electrophoresis (SDS-PAGE), 50 μg of total protein was transferred to a nitrocellulose (NC) membrane and blocked with 3% bovine serum albumin (BSA). The membrane was incubated with rabbit β-actin (1:1000; Cell Signaling Technology, USA), RFP (1:1000; Abcam, UK), PSD-95, GluA1, GluA2, GluN1, GRIN2A, GRIN2B, BACE1, ADAM10, Nicastrin, APP, or GFP antibody (1:200; Bioss, China) at 4 °C overnight. The membrane was washed with PBS, incubated with IR Dye 800CW-conjugated secondary antibody (1:5000; LiCor Biosciences, USA), and subsequently detected with a LI-COR Odyssey Infrared Fluorescent System. The density of each band was quantified using Image-pro Express software, version 6.0 (Media Cybernetics, USA) and was normalized to the corresponding β-actin value to account for variations in loading.
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4

Western Blot Analysis of Cellular Proteins

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Cells were washed twice with ice-cold PBS and scraped into 1 ml of RIPA lysis buffer (Sangon Biotech Co., Ltd., Shanghai, China) with protease inhibitors of PMSF. Lysates were clarified by centrifugation (12,000 rpm for 10 min) and the supernatants were collected. Equal amounts of protein (50 µg) underwent SDS-PAGE and then were electrotransferred to PVDF membranes (Millipore Corp., Billerica, MA, USA), which were then sealed at room temperature for 2 h. The membranes were then incubated overnight at 4°C with the following primary antibodies diluted in blocking buffer: SCD1 (catalog sc-14715), and CD36 (catalog sc-7309) (both from Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), and the internal control β-actin (Cell Signaling Technology, Inc. Danvers, MA, USA). Then, the membranes were washed and incubated with the appropriate HRP-conjugated secondary antibody (Beijing CoWin Bioscience Co., Ltd., Beijing, China) in PBST for 2 h at room temperature. The membranes were then washed three times and reacted with chemiluminescent agent for 5 min. Then they were ECL labeled, exposed, and displayed. Quantification of the resulting images was performed by densitometry with Gel-Pro Analyzer 4.0 software (Media Cybernetics, Inc., Bethesda, MD, USA) and the final readings were normalized against β-actin.
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5

Western Blot Analysis of Cardiac Proteins

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The proteins were extracted from the myocardial tissue samples and analyzed by western blotting, as described previously.20 (link) Extracted protein lysates from the left ventricle were separated on SDS-PAGE and then transferred to the PVDF (polyvinylidene fluoride) membrane. After sealing with 5% (m/v) skimmed milk powder, the membranes were then incubated with primary antibodies, including ADAM17 (Abcam, AB39162, 1 : 2000), TIMP-3 (Abcam, AB3984, 1 : 2000) and β-actin (Wanleibio, WL01845, 1 : 1000) at 4 °C overnight and subsequently with sheep anti-rabbit IgG-HRP (Wanleibio, WLA023, 1 : 5000) at room temperature for 45 minutes. The blotting band density was quantified by densitometric analysis using Image pro-Plus 6.0 software (Media Cybernetics, USA) and then normalized to the values of β-actin.
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6

Western Blot Analysis of Oxidative Stress Markers

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The thawed samples were homogenized in total protein extraction buffer with added proteinase inhibitor. After determination of the protein concentration, denatured protein was subjected to 10% SDS-PAGE and transferred to polyvinylidene fluoride membranes (Millipore Corporation, Billerica, MA, USA). After blocking, the membranes were probed with rabbit polyclonal antibodies anti-Nrf2 (Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-HO-1 and anti-Bcl-2 (Abcam, UK), anti-Bax (CST, Danvers, MA, USA), anti-GAPDH (Proteintech Group, Inc, Wuhan, China), and anti-β-actin (Guge, Wuhan, China) at 4 °C overnight, followed by horseradish-peroxidase-conjugated secondary anti-rabbit antibodies (Proteintech Group, Inc, China) at room temperature for 1 h. The specific bands were visualized with electrochemiluminescence (ECL) reagent and captured by G:BOX Chemi XT4 (Syngene, Frederick, MD, USA). For quantification, the integral optical density (IOD) values of Nrf2, HO-1, Bcl-2, Bax, GAPDH, and β-actin were analyzed using Image-Pro Plus 6.0 software (Media Cybernetics Inc, Silver Spring, MD, USA).
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7

Protein Expression Analysis in Cells

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RIPA lysis buffer (Boster, Wuhan, China) was used to extract protein from indicated cells. BCA Protein Assay Kit (Thermo Scientific, USA) was used to measure protein concentration. A total of 60 μg of protein was separated on 10% SDS-PAGE gels and blotted onto 0.22 μm nitrocellulose membranes (Boster). The membranes were blocked for 2 hours with 5% nonfat dry milk diluted with tris‑buffered saline (TBS) and incubated with primary antibodies (rabbit monoclonal anti-OLFM4 (1:2,000), rabbit monoclonal anti-phosphorylated-FAK antibody (1:500), rabbit monoclonal anti-FAK antibody (1:1,000), rabbit monoclonal anti-MMP2 (1:1,000), rabbit monoclonal anti-MMP9 (1:3,000), and mouse monoclonal anti-β-actin (1:3,000) (Cell Signaling Technology, Inc., Danvers, MA, USA) overnight at 4℃. The membranes were washed with tris-buffered saline containing 0.1% Tween20 (TBST), and then incubated with the appropriate horseradish peroxidase-conjugated secondary antibody (goat anti-rabbit, 1:3,000; goat anti‑mouse, 1:2,000; Wuhan Boster) for 1 h at 37℃. Enhanced chemiluminescence reagent (Merck Millipore, Germany) was used to detect the signal on the membrane. The data was analyzed via densitometry using Image-Pro plus 6.0 software (Media Cybernetics, Rockville, MD, USA) and normalized to the expression of the internal control (β-actin).
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8

Western Blot Analysis of NF-κBp65 in NP Tissues

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Protein samples were prepared from NP tissues using radioimmunoprecipitation assay lysis buffer (Wuhan Boster Biological Technology, Ltd.). Protein concentration was measured using a bicinchoninic acid Protein assay kit (Wuhan Boster Biological Technology, Ltd.). Protein samples (20 µg) were then separated using 10% SDS-PAGE gel and transferred onto a polyvinylidene difluoride membrane (EMD Millipore). The membrane was subsequently blocked with 5% skimmed milk powder for 1 h at room temperature and incubated with primary anti-nuclear factor (NF)-κBp65 (cat. no. 8242) and β-actin (cat. no. 4970) antibodies (Cell Signaling Technology, Inc.) at a dilution of 1:1,000 overnight at 4°C. Samples were then incubated with horseradish peroxidase-conjugated goat anti-rabbit immunoglobulin G secondary antibodies (cat. no. 7074; 1:5,000; Cell Signaling Technology, Inc.) for 1 h at room temperature. Protein bands were visualized using an ECL chemiluminescence kit (EMD Millipore). Protein levels were calculated relative to β-actin and Image-ProPlus software (version 6.0; Media Cybernetics, Inc.) was used for densitometry analysis.
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9

Apoptosis Regulation via AMPK/Sirt1 Pathway

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The expression of the apoptosis-related proteins (Bcl-2 and Bax) and AMPK/Sirt1 were determined using Western blotting. Briefly, equivalent protein samples from each group were separated using 10% or 12% SDS-PAGE and then transferred onto nitrocellulose membranes. The membranes were blocked using 5% skim milk at RT for 1 h and incubated with primary antibodies against p-AMPKα (Thr172) (no. 2535, 1:1000, Cell Signaling Technologies, MA, USA), Bcl-2 (no. 26539-1-AP, 1:2000, Proteintech, Wuhan, Hubei, China), AMPKα (no. 2603, 1:1000, Cell Signaling Technologies, MA, USA), Bax (no. 2772, 1:1000, Cell Signaling Technologies, MA, USA), Sirt1 (no. 9475, 1:1000, Cell Signaling Technologies, MA, USA), and β-actin (no. TA09, 1:2000, ZSGB-BIO, Beijing, China) at 4 °C overnight. The membranes were rinsed thrice with Tris-buffer saline with 0.25% Tween-20 (v/v) and incubated with a horse radish peroxidase (HRP)-conjugated secondary antibody (no. BA1054, BA1050, 1:30000, Boster Biological Technology, Wuhan, China). The membranes were visualized using a SuperSignal™ West Dura Extended Duration Substrate kit (Thermo Fisher Scientific, IL, USA). After exposing the X-ray film, the density of the bands was standardized over β-actin and calculated using a Gel-Pro Image Analysis software (Media Cybernetics, Rockville, MD, USA).
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10

Molecular Analysis of Signaling Pathways

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qPCR and Western blot were performed as previously reported 19 (link). qPCR was carried out using the Hairpin-itTM microRNA qPCR Quantitation Kit (GenePharma, Shanghai, China) and LightCycler 96 (Roche, Germany). U6 snRNA was used as an internal control for miR-92b, and the mRNA levels of PTEN, TNF-α and IL-6 were normalized to GAPDH. The 2-ΔΔCt method was employed to calculate relative expression of each gene. For Western blot analysis, the protein blots were incubated with following antibodies: rabbit anti-TLR4 (1:1000, 7074, Cell Signaling Technology, USA), rabbit anti-phospho-NF-κB p65 (1:1000, 3033, Cell Signaling Technology, USA), rabbit anti-NF-κB p65 (1:1000, 4764, Cell Signaling Technology, USA), rabbit anti-β-actin (1:1000, 4970, Cell Signaling Technology, USA), rabbit anti-Bax (1:200, bs-0127R, Bioss, China), rabbit anti-Bcl-2 (1:200, bs-4563R, Bioss, China), rabbit anti-phospho-PI3K (1:200, bs-3332R, Bioss, China), rabbit anti-PI3K (1:1000, ab227204, Abcam, USA), rabbit anti-phospho-AKT (1:1000, ab8932, Abcam, USA), rabbit anti-AKT (1:500, GB111114, Servicebio, China), rabbit anti-β-catenin (1:5000, ab196204, Abcam, USA). The optical density (OD) value of each protein band was quantified using the Image-Pro Plus 6.0 (IPP 6.0) software (Media Cybernetics Inc., USA) and normalized to β-actin.
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