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47 protocols using mk 1775

1

Mutant KRAS Expression and Drug Sensitivity

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NCI-H1299 derived clones were grown in RPMI-1640 medium including 500 µg/mL of G418 (Gibco). Clones were obtained by transfecting the NCI-H1299 cell line with the expression plasmids encoding for the mutant G12C, G12D and G12V KRAS and the wt KRAS, used as control. Details of transfection, KRAS protein expression and activation are reported in our previous paper14 (link). Cells are routinely tested by PCR for mycoplasma contamination and authenticated with the PowerPlex 16 HS System (Promega) every six months by comparing the STR profiles with those deposited in ATCC and/or DSMZ databases. esiRNA were purchased by Sigma Aldrich and transfected by Lipofectamine 2000 (Invitrogen). Sorafenib and MK1775 (Selleckchem) DMSO stock solutions were dissolved in medium just before use. The MTS assays (Promega) were done as described in14 (link). Survival curves were plotted as percentages of untreated controls, with at least six replicates for each time point. The mean and SD of at least three independent experiments are presented.
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2

Inhibition of WEE1 during differentiation

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Inhibition of WEE1 was accomplished using MK-1775 [21 (link)] (Selleck Chemicals S1525) diluted from 10 mM/1 mL DMSO to 100 nM. Cells were treated from initiation of differentiation to 8 hours, 16 hours, or 24 hours of differentiation. For differentiation longer than 24 hours, the inhibitor was removed after 24 hours of treatment.
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3

Establishing DS-AMKL Cell Lines for Research

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CMK cells were purchased from the German Collection of Microorganisms and Cell Cultures (DSMZ; Braunschweig, Germany). The CMY cell line was a gift from Dr. A. Fuse (National Institute of Infectious Diseases, Tokyo, Japan). The DS-AMKL cell lines CMK and CMY were both cultured in RPMI 1640 with 10% FBS (Life Technologies, Carlsbad, CA) and 2 mM L-glutamine plus 100 U/ml penicillin and 100 μg/ml streptomycin (Life Technologies), in a 37°C humidified atmosphere containing 5% CO2/95% air. AraC was purchased from Sigma (St. Louis, MO) and MK-1775 was purchased from Selleck Chemical (Houston, TX). Diagnostic blast cells from DS children with AMKL (n = 2) were obtained from the Children's Hospital of Michigan leukemia cell bank. Both patients remain in first remission. Written consent was obtained according to the Declaration of Helsinki. The research protocol was approved by the Human Investigation Committee of Wayne State University School of Medicine.
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4

Pharmacologically-Active Compound Library

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The Library of Pharmacologically-Active Compounds (LOPAC), 6α-methylprednisolone (6MP), dexamethasone (Dex), mifepristone, PD166285 (PD16), PD173952 (PD17), NU6027 and CGP7454A were purchased from Sigma-Aldrich; dasatinib, MK-1775 and CHIR-124 from SelleckChem. All compounds were diluted in DMSO to 10 mM stock solutions and kept at -20°C.
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5

Inhibition of Cell Proliferation and Apoptosis Induction

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JNJ-10198409 (JNJ) and Picropodophylin (PPP) were purchased from Calbiochem, Merck Millipore (Nottingham, UK). Propidium iodide, 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), PDGF-BB, IGF-1, nocodazole, chloroquine, AEBSF, Ucf-101 and salubrinal were purchased from Sigma-Aldrich (St. Louis, MO, USA), 7-Amino-Actinomycin D (7-AAD) was purchased from BD Biosciences (Franklin Lakes, NJ, USA). Z-VAD (OMe)-FMK (ICn), Z-D(OMe)E(Ome)VD(OMe)-FMK (IC3), Ac-IETD-CHO (IC8) and necrostatin-1 were purchased from Calbiochem, Merck Millipore (Darmstadt, Germany). MK-1775 was purchased from Selleckchem (Houston, TX, USA).
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6

Evaluating DNA Damage Response in Pancreatic Cancer

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All pancreatic cancer cells were purchased from ATCC. MIA PaCa2, PANC-1, Hs 766T, HPNE, and Capan-1 cells were cultured in DMEM (Gibco/Invitrogen, Carlsbad, CA); BxPC3, Capan-2, PL11 and SU.86.86 cells were cultured in RPMI 1640. All cells were supplemented with 10% FBS (Gibco/Invitrogen) expect PL11 (15% FBS and insulin), 1% L-glutamine (Gibco/Invitrogen), and 1% penicillin-streptomycin (Invitrogen) at 37 °C in 5% humidified CO2 incubators.
For transient transfections, siRNAs against FANCD2, BRCA2 and control oligos (Dharmacon) were transfected using lipofectamine 2000 (Gibco/Invitrogen) as previously described18 (link). All cells were harvested 48 hours post-transfection.
All cells were treated with the IC50 values of the DNA damaging agent MMC (mitomycin C; (Sigma, St. Louis, MO) and oxaliplatin (Sigma) as previously described18 (link) by adding directly into the culture medium. MK-1775 was purchased from Selleckchem, Houston, TX.
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7

Ependymoma Cell Culture and Drug Screening

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Ependymoma cell cultures were isolated from patients and cultured on Laminin (Sigma) and in Neurobasal media (Invitrogen) consisting of: sodium pyruvate (Invitrogen), B27 (Invitrogen), Glutamine (Cleveland Clinic Media Core), human EGF (Invitrogen), human basic FGF (Invitrogen), and penicillin/streptomycin (Cleveland Clinic Media Core). Media was replenished every other day while leaving ~50% conditioned media to encourage continued cell proliferation. Cell viability assays were performed in 96 wells using an Alamar Blue stain (Invitrogen) according to manufacturer’s instructions. Drug response assays were performed by seeding cells overnight, treating the following day with increasing drug concentrations, and reading by Alamar Blue Absorption following 72 hours of treatment. AZD4547 and MK1775 were obtained from Selleck Chemicals. JQ1 was provided by the laboratory of James E. Bradner (Harvard). All cell lines were confirmed to be mycoplasma free using a PCR-based detection strategy with positive and negative controls.
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8

Chemotherapy Agents and Targeted Inhibitors

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Chemotherapy drugs (Doxorubicin, Ara-C, and Daunorubicin) were obtained from the clinical pharmacy at Cincinnati Children’s Hospital. WEE1 inhibitor MK-1775 and CHK1 inhibitor MK-8776 were obtained from Selleckchem.
Detailed methods are described in the Supplementary information.
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9

Cell Cycle Regulation Inhibitor Assay

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The inhibitors used in this study were employed at the following concentrations: Roscovitine at 25 μm (Cdk inhibitor; Selleck Chemicals, Houston, TX, USA), NU6140 at 10 μm (Cdk2 inhibitor; Calbiochem), RO‐3306 at 10 μm (Cdk1 inhibitor; Calbiochem, Darmstadt, Germany), MG‐132 at 10 μm (Inhibitor of the proteasome; Sigma‐Aldrich, Saint Louis, Missouri, USA), BI2536 at 100 nm (Plk1 inhibitor; Selleck Chemicals), MK‐1775 at 100 μm (Wee1 inhibitor; Selleck Chemicals), Nutlin‐3 at 13 μm (Mdm2 antagonist; Sigma‐Aldrich), SB202190 at 10 μm (p38 inhibitor; Selleck Chemicals), Cycloheximide at 10 μg mL−1 (Inhibitor of protein translation; Sigma‐Aldrich). Etoposide (topoisomerase II inhibitor; Sigma‐Aldrich) was employed at 1 μm, which is sufficient to induce robust checkpoint arrest in cells at all cell cycle stages (Müllers et al., 2014). Figure S1D (Supporting information) shows the robustness of the checkpoint arrest as well as the efficiency of Cdk inhibitor treatment.
SMARTpool ON‐TARGET plus siRNAs targeting CDKN1A (p21), CDK1, or CDK2 were purchased from Dharmacon and employed at a concentration of 20 nm using HiPerFect (Qiagen, Hilden, Germany) transfection at 48 and 24 h before analysis of the phenotype.
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10

Prexasertib and Cisplatin Resistance Study

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Cisplatin was purchased from Sigma (St. Louis, MO, USA). Prexasertib was provided by Eli Lilly or purchased from MedChemExpress (Monmouth Junction, NJ, USA). The Prexasertib provided by Eli Lilly was used to establish acquired‐resistant cell lines, evaluate the characteristics of the resistant cell lines, do the inhibition experiments by Wee1 inhibitor and detect the downstream proteins. All other experiments were performed with Prexasertib purchased from MedChemExpress. Several experiments were performed using both drugs with superimposable results. AZD7762, PF477736, RO3306, K3861, THZ1, BIRB796 and MK1775 were purchased from Selleckchem (Houston, TX, USA).
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