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25 protocols using anti foxp3 antibody

1

Chromatin Immunoprecipitation of Foxp3 in Tregs

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Using Magna ChIP A/G Kits (#17-408, Merck Millipore, Billerica, MA) and Pierce Magnetic ChIP kits (ThermoFisher Scientific, Waltham, MA), DNA-protein complexes were immunoprecipitated from 2 million Tregs per condition using either isotype control IgG or anti-Foxp3 antibody (eBioscience cat# 14-4774-82). The immunoprecipitated genomic DNA was probed by RT-PCR using primers for Myc promoter: forward 5′-TGA TCA GGG CCG ACT TTT TT-3′ and reverse 5′-AAC CCA AGC TTT CCC CTT TTA TT-3′; Myc TATA box region: forward 5′-TAG CGC GCG AGC AAG AG-3′ and reverse: 5′-GTA AAC AGT AAT AGC GCA TGA AT-3′.
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2

Maraviroc and Mouse Chemokine Analyses

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Maraviroc was obtained from Sigma-Aldrich (St. Louis, MO, USA) (for in vitro experiments) or GlaxoSmithKline (Brentford, UK) (for in vivo experiments). Mouse CCL3 was obtained from Peprotech (Rocky Hill, NJ, USA). The following antibodies were used as the primary antibodies for immunohistochemical analyses: goat anti-CCR5 antibody (Santa Cruz Biotechnology, Dallas, TX, USA), rat anti-Ly6G antibody (BD Biosciences, San Jose, CA, USA), rat anti-F4/80 antibody (Serotec, Kidlington, UK), mouse anti-α-SMA antibody (Dako, Glostrup, Denmark), rabbit anti-type I collagen antibody, rabbit anti-CD31 antibody and rabbit anti-EGF antibody (Abcam, Cambridge, UK). The following rat anti-mouse antibodies were used as the primary antibodies for the flow cytometric analysis: anti-CD11b antibody (BD Biosciences), anti-CD25 antibody (BioLegend, San Diego, CA, USA), anti-CD45 antibody (eBioscience, San Diego, CA, USA), anti-F4/80 antibody (eBioscience), anti-Foxp3 antibody (eBioscience), anti-Ly6G antibody (Gr-1) (Tonbo Biosciences, San Diego, CA, USA), anti-MIP-1α antibody (R&D Systems, Minneapolis, MN, USA), anti-CCR5 antibody (BioLegend), and isotype-matched control IgGs for individual rat antibodies (BD Biosciences).
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3

Multiparametric Analysis of Splenocytes

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Splenocytes were obtained from recipients 5 days after transplantation and stained with fluorochrome-labeled monoclonal antibodies (mAbs) against CD4, CD8, CD62 ligand (CD62 L), and CD44 (eBioscience, San Diego, CA, USA). For the intracellular staining of foxp3, splenocytes were fixed and permeabilized with Fixation/Permeabilization buffer and then stained with an anti-foxp3 antibody (eBioscience). For cytokine staining (IFN-γ, IL-4 and IL-17), the cells were first incubated with 1x cell stimulation cocktail (eBioscience) for 4 h. The cells were then fixed and permeabilized with Fixation/Permeabilization buffer (eBioscience), followed by staining with fluorochrome-labeled mAbs against IFN-γ, IL-4, and IL-17 and an isotype control. Flow cytometry analysis was performed with a FACSCaliber system (BD Biosciences), and analyzed with FlowJo software.
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4

Regulatory T Cell and Th17 Analysis

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Draining lymph node cells were collected for further analysis at the end of CIA as described above. For regulatory T cell analysis, the cells were surface-stained with antibodies against CD4 and CD25, followed by intracellular staining with anti-Foxp3 antibody (eBioscience; San Diego, CA). For the Th1 and 17 cells analysis, the lymph node cells were stimulated with PMA (50 ng/ml; Sigma-Aldrich, St. Louis, MO, USA) plus ionomycin (1 μg/ml; Sigma-Aldrich, St. Louis, MO, USA) for 5 h in culture medium in the presence of GolgiStop (BD Biosciences, San Jose, CA, USA), then surface-stained with anti-CD4 antibody followed by intracellular staining with anti-IL-17 and anti-IFN-γ antibodies (eBioscience; San Diego, CA). The cells were analyzed on an LSRII flow analyzer (BD Biosciences, San Jose, CA, USA) using FlowJo (Tree Star, Ashland, OR) (Qiao et al. 2012 (link); Ying et al. 2010 (link);).
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5

Quantification of Regulatory T Cells

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Blood obtained from the animals at the time of perfusion was collected in EDTA-tubes to avoid blood coagulation. 30µl of the blood were incubated with surface antibodies in PBS as indicated per spleen and lymph nodes for 15 min at RT. Cells were washed with flow FCSB and centrifuged at 300 g for 5 min at 4 °C. Red blood cells were then lysed and cells were fixed with Optilyse B (Beckmann and Coulter) for 10 min at RT. Fixative was washed with ddH20 to finish red blood lysis for 15 min and centrifuged at 300 g for 5min at 4 °C. Then, cells were resuspended in 100 µL Fix & Perm B (ThermoFisher Scientific) with an anti-Foxp3 antibody (1:100; eBioscience, clone FJK-16S) overnight at 4 °C. Cells were then washed with FCSB and centrifuged at 300 g and 4 °C for 5 min. Final pellet was resuspended, data were acquired on a FACSCanto II and analyzed using FlowJo software version 9.0 (BD). To calculate cell numbers, singlets were identified by FSC-H versus FSC-A and viable cells gated on CD4 expression, and subsequently CD25+ and Foxp3+ and CD25+Foxp3+ cells.
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6

Evaluating BMDC Maturation and Inhibitory Phenotype

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To evaluate BMDC maturation and inhibitory phenotype, BMDCs were stained with fluorophore-tagged monoclonal antibodies against mouse CD11c (N418), mouse CD40 (3/23), mouse CD80 (16-10A1), mouse CD86 (CL-1), mouse I-A/I-E (MHC class II) (M5/114.152), PD-L1 (MIH7), PD-L2 (TY25), CD206 (C068C2), and dectin-1 (RH1). For T cell assay, LN cells and splenocytes were stained with fluorophore-tagged monoclonal antibodies against mouse mouse CD3 (145-2C11), CD4 (GK1.5), mouse CD25 (PC61), and mouse/human FoxP3 (FJK-16s). Prior to staining with specific antibodies, the cells were incubated with Fc block (purified anti-mouse CD16/32) to reduce non-specific binding. All antibodies were obtained from BioLegend (San Diego, CA, USA) except for the anti-FoxP3 antibody, which was obtained from eBioscience (San Diego, CA, USA). The stained cells were assessed by flow cytometry (CytoFLEX, Beckman Coulter, San Diego, CA, USA) and the data were analyzed using Kaluza Flow Analysis Software (Beckman Coulter). For flow cytometry acquisition, the live cells of all samples were acquired at 20,000 cells/sample. Accordingly, the same electronic gate was applied to all sample for flow cytometry acquisition and analyses.
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7

Immunophenotyping of T Cell Subsets

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Cell surface staining was performed using antibodies against CD4, CD8, and CD25 from eBioscience (San Diego, CA). Appropriate isotype matched monoclonal antibodies were used as controls. To evaluate cell apoptosis and death, cells were stained with antibodies against Annexin V and 7-AAD (BD Biosciences) in appropriate staining buffer (BD Biosciences). To measure the percentage of CD4+CD25+FoxP3+ cells, cells were permeabilized and stained with anti-FoxP3 antibody (eBioscience) according to manufacturer's instructions. Flow cytometric analysis was performed on a FACSCanto II flow cytometer using DiVA software package (BD, Franklin Lakes, NJ). Data were analyzed using CytoBank software (https://www.cytobank.org).
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8

Isolation and Characterization of Naive CD4+ T Cells

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For naive CD4 T cell selection, magnetically selected CD4-enriched splenocytes were labeled with CD25-FITC, CD62L-PE, and CD4-PerCP/Cy5.5 antibodies (BioLegend). The cells were then subjected to cell sorting (FACSAria) to obtain CD4+CD62L+CD25 naive T cells. A cell purity of more than 95% was routinely achieved. For cytokine staining, activated T cells were re-stimulated with PMA (50 ng ml−1) and ionomycin (1 μM) for 4 h and then stained using the Fixation and Permeabilization Solution Kit with BD GolgiStop (BD Biosciences, Franklin Lakes, NJ, USA). For transcription factor staining, the cells were stained with an anti-Foxp3 antibody (eBioscience, Santa Clara, CA, USA) using the Transcription Factor Staining Buffer Set (eBioscience). Occasionally, the FOXP3 Fix/Perm Buffer Set (BioLegend) was used to stain GFP-expressing cells. The cells were then analyzed by flow cytometry (FACSCalibur).
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9

Foxp3 Immunohistochemical Staining

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The sections were stained immunohistochemically with anti-Foxp3 antibody (eBioscience, San Diego, CA, USA), then detected by diaminobenzidine (DAB) staining.
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10

Multiparametric Flow Cytometry of Immune Cells

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Thymi or spleens were dissected, passed over filters, and stained using primary antibodies against TCRβ, CD8α, CD25, CD44, CD45R, CD45, CD62L, CD80 (all BioLegend), CD4, and/or CD11c (both eBioscience). In some cases, cells were fixed using fixation/permeabilization buffer and stained with anti-Foxp3 antibody (eBioscience) in permeabilization buffer.
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