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18 protocols using plant growth chamber

1

Arabidopsis Mutant Phenotyping Protocol

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The experiments were performed by using Arabidopsis (Arabidopsis thaliana) lines in the Col-0 ecotype background unless stated otherwise. We obtained the single, double and h1.1h1.2h1.3 (3h1) triple mutant from the Baroux lab (University of Zürich, Switzerland) as described previously (17 (link)). Plants were grown on soil (jiffy pots, http://www.jiffypot.com/), in plant growth chambers (Percival Scientific) under short-day conditions (8 h light/ 16 h dark) at 22°C.
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2

Quantifying Gene Expression in Plants

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Total RNA was extracted from 4‐wk‐old plants grown on jiffy pellets in plant growth chambers (Percival Scientific) under 16 h : 8 h, light : dark photoperiod at 22°C, 60% humidity, using NucleoSpin Plant RNA (Macherey Nagel, Düren, Germany) kit following the manufacturer's protocol. First‐strand cDNA was synthesized from 1.5 μg of total RNA using SuperScript III First‐Strand Synthesis SuperMix kit (Invitrogen). The diluted cDNA (10 times) was used to perform quantitative RT‐PCR (qRT‐PCR) using SsoAdvanced Universal SYBR Green Supermix (Bio‐Rad) on StepOnePlus Real‐Time PCR System (Applied Biosystems, Waltham, MA, USA). The data were analyzed using Bio‐Rad Cfx Manager software. ACTIN was used as a housekeeping gene for normalization of gene expression levels. Analyses were performed in triplicate and was repeated thrice with independent RNA samples. Primers used in this study are listed in Table S3.
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3

Arabidopsis thaliana Seed Germination and Growth

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Prior to planting, Arabidopsis thaliana (Columbia) seeds were surface sterilized with 70% (v/v) ethanol followed by 0.5% (v/v) bleach treatment for 3 min. The seeds were washed thrice with sterile water and plated on autoclaved MS medium (with 3% [w/v] Suc), pH 5.7, and containing 0.05% (v/v) Plant Preservative Mixture (Biogenuix Medsystem Pvt. Ltd.) and kept at 4 °C for 48 h in the dark for synchronized seed germination. The plates were transferred to plant growth chambers (Percival, USA) that had a uniform light intensity of 8,000 lx (under a 16-h-light/8-h-dark cycle). The temperature of the growth chamber (Percival CU-36L6) was maintained at 22 °C throughout, and the humidity was set to 80%. Three-week-old seedlings were transferred from MS plates to soil and grown again in a growth chamber (Percival AR-36L3). The soil consisted of equal proportions of garden soil, peat, perlite, and vermiculite. Plants were grown in a randomized manner in the growth chambers and at frequent intervals, their positions were changed.
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4

Arabidopsis and Nicotiana Growth Conditions

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Experiments were performed by the usage of Arabidopsis thaliana of the Columbia accession grown on soil in plant growth chambers (Percival Scientific) under short-day conditions (8h light/ 16 h dark) at 22°C. Nicotiana benthamiana were grown under long-day conditions (16 h light + 8 h darkness) at 28°C. gtl1-2 (Salk_005965), gtl1-5 (Salk_044308) and mpk4-2 (Salk_056245) seeds were obtained from NASC.
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5

Arabidopsis Salt Stress Response

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All Arabidopsis thaliana lines used in this study are in Columbia-0 (Col.0) background. The IDD4 transgenic lines used are published (Völz et al., 2019b (link)). The MAPK mutant line used is mpk6–2 (SALK_073907). Prior to every experiment, seeds were surface sterilized and stratified at 4°C for 2d. The stratified seeds were plated on the ½ strength Murashige and Skoog (MS) medium with 1% agar and plants were grown in plant growth chambers (Percival Scientific) under 16h light: 8h dark condition at 22°C. Unless stated, the plants were grown for 5d on ½ MS and then to apply salt-stress, were transferred onto fresh with ½ MS ± 100mM NaCl (Sigma) and grown for another 16d.
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6

Arabidopsis and Nicotiana Growth Conditions

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Experiments were performed by using Arabidopsis thaliana of the Columbia accession grown on soil in plant growth chambers (Percival Scientific) under short-day conditions (8h light/ 16 h dark) at 22°C. Nicotiana benthamiana were grown under long day conditions (16 h light + 8 h darkness) at 28 °C. idd4 (Salk_148352C) seeds were obtained from NASC.
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7

N. benthamiana Protein Extraction Protocol

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N. benthamiana plants were grown in a Plant Growth
Chamber (Percival Scientific, Perry, IA) at 25 °C in soil and watered
frequently. After agroinfiltration, plants were grown at 25 °C for 4 days
before harvest [18 (link)].
Protein extraction was carried out in the extraction buffer (25 mM sodium
phosphate, 10 mg/mL sodium ascorbate, 0.1% Triton X-100, 1 mM EDTA, 0.3 mg/mL
PMSF, 10 μg/mL leupeptin at pH 6.6) at a ratio of 5:1 of buffer (mL) to
fresh leaf tissue (g) with a PowerGen 700 homogenizer (Fisher Scientific,
Waltham, MA). Samples were then centrifuged at 17,000 ×
g for 20 min. The supernatant was filtered through
Mircacloth, while the precipitate was discarded.
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8

Lettuce Leaf Lysate Preparation

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Iceberg Lettuce cv. Salinas seeds were kindly provided by Ivan Simko (USDA, Agricultural Research Service, Salinas, CA, United States). Plants were grown in Supersoil potting mix with approximately 150 mg of Osmocote Plus (15-9-12) at 22°C with a 14-h photoperiod for 6–8 weeks in a plant growth chamber (Percival Scientific, Inc.), and fertilized weekly with 20-20-20 (N-P-K) liquid fertilizer past the five expanded leaf-growth stage. For experiments with cut lettuce in modified atmosphere packaging (MAP) bags, mature Iceberg lettuce heads were acquired from local commercial sources, trimmed of outer leaves, and the leaves shredded into 2-mm wide strips with a sharp knife.
Lettuce leaf lysate was prepared as described previously with modifications (Kyle et al., 2010 (link)). Iceberg lettuce heads were obtained commercially and all portions except the outermost leaves and inner-most achlorophyllous heart were used. The leaves were homogenized in a Omega juicer (Omega Model No. 8003), with the homogenate kept on ice during production and immediately centrifuged at 7,000 rcf at 4°C for 10 min to pellet chloroplasts and plant debris. The supernatant was sterilized by passage through 0.45 μm- then through 0.2 μm pore-size filters.
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9

Cultivation of S. hexandrum for Experimental Studies

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Plants of S. hexandrum, collected from the natural habitat (Parashar lake, Mandi; 2,730 m asl; 30°12′ N 77°47′ E, India), and maintained at CSIR-Institute of Himalayan Bioresource Technology, Palampur (1,300 m asl; 32°06′ N, 76°33′ E, India) were used for the experimental purpose. To avoid the impact of age/rhizome size, morphologically similar plants having comparable leaf and root size without any rhizome formation were selected for this study. The Biological Diversity Act 2002 of India permits bonafide Indians to collect plant samples from native habitats for scientific investigations (Venkataraman, 2009 ).
The plants were grown in potting mix (constituted of soil, sand, and farmyard manure in a ratio of 2:1:1) under a long day (16 h) photoperiod in a plant growth chamber (Percival Scientific, Perry, IA, United States) set at 25 ± 2°C with (photon flux density of 200 μmol m–2s–1 and relative humidity of 70 ± 10%), as described earlier (Kumari et al., 2014 (link)).
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10

Insecticidal Potential of Termialia Sebifera Extracts

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The residual toxicity of leaf/bark ethanolic aqueous extract, SO at six concentrations (625–20,000 mg/L), and their combinations of T. sebifera (SO+LEE, SO+BEE) in a 1:1 ratio was prepared in five concentrations (125–2000 mg/L) and evaluated against A. craccivora under controlled conditions (26 ± 2 °C, 70% ± 5% relative humidity, and photoperiod of 16 h light and 8 h dark) in a plant growth chamber (Percival Scientific, Perry, IA, USA). The Phaseolus vulgaris plants were raised in plastic pots (7 × 9 cm) filled with the potting mixture (1:1:1 ratio of vermiculate:cocopeat:perlite). One-week-old plants (3–4 leaf stage) were inoculated with two-day-old nymphs of A. craccivora and allowed to settle for 24 h. After settling, test solutions/concentrations were sprayed on plants using a hand sprayer. Observations of the number of dead insects/plants were recorded at 24, 48, 72, and 96 h after treatment. There were six treatments, and each treatment was replicated five times. The fractional effect indices (FEI) were calculated as mentioned above to study the joint action of binary mixtures/combinations.
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