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5890 gas chromatograph

Manufactured by Hewlett-Packard
Sourced in United States

The 5890 gas chromatograph is a laboratory instrument used for the separation and analysis of volatile chemical compounds. It features a heated oven that holds a chromatographic column, through which a carrier gas and the sample mixture flow. The different compounds in the sample separate based on their interactions with the column material, allowing them to be detected and measured by the instrument's detector.

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10 protocols using 5890 gas chromatograph

1

Measurement of Plasma Metabolic Markers

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Plasma glucose was measured by the glucose oxidase method using a glucose analyzer (Yellow Springs Instrument Co., Yellow Springs, Ohio), insulin by commercially available radioimmunoassay (Millipore), HbA1c by high-performance liquid chromatography (Tosoh Medics) and adiponectin (ug/mL) by a radioimmunoassay kit (Linco Research) as previously reported (29 (link),37 (link)). The intra- and inter- assay coefficients for adiponectin were 3.6 and 9.3% for low, and 1.8 and 9.3% respectively for high serum concentrations (37 (link)). Plasma lipid concentrations were determined using the standards of the Centers for Disease Control and Prevention (13 (link)). Deuterium enrichment of glucose in the plasma was determined on a Hewlett-Packard Co. 5971 mass spectrometer (Palo Alto, CA) coupled to a 5890 gas chromatograph (13 (link)). Deuterium enrichment of glycerol in the plasma was determined according to previously described methods (24 (link)).
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2

Tracing Microbial PHB Mineralization in Soils

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PHB mineralization rates were measured in field soils for every ecoplot. Three sampling plots (20 x 20 cm) were randomly selected per ecoplot. The litter layer was cleared to expose the Oa / A-horizon soil and stainless-steel chambers (radius 1.25 cm) were driven into the soil at an even depth (2 cm). Photographs of field sampling are provided (Figure S1). Soils were amended with 150 µl of either 13 C7-labeled p-hydroxybenzoic acid (99% atom 13 C; Sigma-Aldrich) or unlabeled control (' 12 C'; Sigma-Aldrich) at a concentration of 1,000 ppm (6.9 and 7.3 mM, respectively). Chambers were immediately enclosed with rubber septa and 13 CO2 was sampled five times over a period of 27 hrs. At each time point, 2.5 mL of headspace was sampled and stored in evacuated 2-mL vials prior to analysis with a Hewlett Packard 5890 gas chromatograph (Wilmington, DE) equipped with a 5971A mass selective detector (details in Supplementary Methods). Net 13 CO2 was determined by subtracting average natural abundance 13 CO2 in 12 C controls from the total 13 CO2 respired in 13 C-PHB-amended soils. Following the incubation period, approximately 0.5 g of soil was collected from the upper 1 cm of the dosed soil, transported on ice and stored at -80°C for use in DNA-SIP.
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3

Fatty Acid Composition Analysis of Oils

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The fatty acid composition of the oils were determined as methyl esters, which were prepared according to MPOB Test Method p3.4 28) . Fatty acid methyl esters (FAME) were prepared by dissolving 50 mg of fat blend in 950 μL hexane (Merck, Darmstadt, Germany) in a 2-ml screw-capped vial.
Fifty microliter of 1 M sodium methoxide (Merck, Darmstadt, Germany) was added and the mixture was then mixed vigorously with a vortex mixer for 5 min. One milliliter of distilled water was added and the mixture was mixed thoroughly. The mixture was then allowed to settle and separate into two distinct layers. The clear supernatant layer of fatty acid methyl ester (FAME) was decanted and a small amount of anhydrous sodium sulfate (Merck, Darmstadt, Germany) was added to remove traces of moisture. FAC analysis was conducted according to MPOB Test Method p3.5 28) using a capillary column (60 m×0.25 mm i.d.) with a split ratio of 1:100 and flow rate of 0.85 ml N 2 / min at an oven temperature of 230℃. Analysis was performed under isothermal conditions on a Hewlett-Packard 5890 Gas Chromatograph (Avondale, PA) . The FAC analysis was carried in triplicate.
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4

Spectroscopic Characterization of Compounds

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1D- and 2D-NMR spectra were recorded in CDCl3 with a Bruker AVANCE II 400 spectrometer (Bruker, Billerica, MA, USA) operated at 400 MHz for 1H and at 100 MHz for the 13C nucleus. Tetramethylsilane (TMS) was used as the internal reference (δ 0.00). The high resolution mass spectra were determined in a Bruker MicroQTOF-II mass spectrometer (Bruker), equipped with an ESI source operated in positive mode at 180 °C with a capillary voltage of 4500 V. Mass accuracy was verified by calibration before and after sample introduction, using sodium formate (1 mM). Both samples and calibrant were introduced using a syringe pump at 10 µL min−1. Electron impact mass spectra (EI-MS) were obtained at 70 eV by GC–MS on a Hewlett–Packard 5970 Series mass spectrometer interfaced (Hewlwtt-Packard, Palo Alto, CA, USA) with a Hewlett–Packard 5890 gas chromatograph fitted with a column (HP-5MS, 15 m × 0.25 mm i.d., temperature from 200–290 °C, 10 °C/min). HPLC was performed in a Shimadzu chromatograph with a diode array UV-Vis detector (Shimadzu, Kyoto, Japan). Fourier transform infrared spectra were acquired on a FTIR Nicolet 510P spectrometer (Thermo Scientific, Waltham, MA, USA). Spectra over a range of 4000–500 cm−1 with a resolution of 2 cm−1 (50 scans) were recorded using KBr pellets.
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5

Aflatoxin and Ethanol Analysis in Corn Samples

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The quantitative analysis of the total AFs (B1, B2, G1, and G2) in corn samples and corn samples after bioethanol production (the stillage obtained after drying at 50°C for 24 h) was performed by a competitive enzyme linked immunosorbent assay (ELISA) according to the total AF test (AgraQuant®, Romer Labs Ltd., Germany) procedure. The ground test sample amount used in the ELISA assay was 100 g. Mycotoxin extraction and testing was carried out according to the manufacturer’s instructions.
Acidity analysis of fermented broth in bioethanol production was performed according to our previous study (Juodeikiene et al., 2012 (link)). The concentration of ethanol was determined using direct distillation and pycnometry.
Volatile compound determination was completed by gas chromatography (GC). Corn samples with different contamination levels were used for bioethanol production (Table 1). The bioethanol production was performed by using the low-temperature process according to Juodeikiene et al. (2014a) (link). A Hewlett-Packard 5890 gas chromatograph equipped with an FID detector was used for the quantitative analysis of volatile compounds as described by Juodeikiene et al. (2014a) (link).
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6

GC-MS Analysis of Metabolite Samples

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GC-MS was performed using a ame ionization detector (Model: Varian Star 3400 CX, OH, USA). Brie y, 15 m DB-1 megabore column of 100% dimethylpolysiloxane was used for the separation of the crude metabolite sample (Gocan 2002) . The sample was injected into a fused silica column [(25m x 0.22mm x 0.25µm (length x width x thickness)] at 22 o C which was focused cryogenically with chilled acetone (time: 2 min). This column was previously joined with a Hewlett-Packard 5890 gas chromatograph, linked with a selective Hewlett-Packard mass detector. For the carrier gas, helium was used and the ow rate was adjusted at 1 ml/min. The temperature of GC-column was from 35-200 o C at 4 o C /min ramp rate. The result obtained in the form of unknown compounds were compared with mass spectra (MS) using NIST/EPA/NIH mass spectroscopy library (Version 17).
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7

Quantitative Analysis of Melatonin and BHB

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Quantification of melatonin was performed using an Acquity ultrahigh-performance liquid chromatograph (Waters, Milford, Mass) coupled with a Quattro Ultima triple-stage quadrupole mass spectrometer (Micromass, Manchester, UK). Chromatographic separation was performed with a BEH C18, reversed-phase UPLC column (50 × 2.1 mm; particle size, 1.7 μm; Waters). Quantification of BHB was performed using Hewlett-Packard 5971 MSD coupled with a 5890 gas chromatograph (gas chromatography/mass spectrometry). The chromatographic separation was performed with an Rx-5-ms capillary column (30 m × 0.25 mm; Restek, Bellefonte, Pa). Quantification was performed with peak area ratios obtained from multiple reaction monitoring (melatonin) or selected ion monitoring (BHB) and were used for the construction of calibration curves, using weighted (1/×) linear least-squares regression of the serum concentrations and the measured peak area ratios. Data collection, peak integration, and calculations were performed using QuanLynx (melatonin) or HP Chemstation and Chromperfect (BHB) software. Assay accuracy and variability were 98.6% and 4.4% (melatonin) or 106.1% and 2.9% (BHB), respectively.
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8

Fatty Acid Profiling of Thylakoid Membranes

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Lipids were extracted from the thylakoid membranes with a mixture of chloroform and methanol (1:2; v/v), and fatty acids were analyzed by the procedure described by Diao et al. (1997) . Extracted lipids were subjected to methanolysis in the presence of a mixture of H 2 SO 4 and methanol (5:95; v/v), using heptadecanoic acid (C 17:0 ) as an internal standard at 85°C for 60 min. Fatty acid analysis was performed using a Hewlett-Packard 5890 Gas Chromatograph (Hewlett-Packard Company, Wilmington, DE, USA) equipped with a hydrogen flameionization detector with a 33-m capillary column. The fatty acids were identified based on their retention times in comparison with those of known standards.
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9

Plasma Phospholipid Fatty Acid Analysis

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Plasma phospholipid fatty acids were measured using a method described previously [14 (link),16 (link)]. In summary, lipids were extracted from plasma with a mixture of chloroform:methanol (2:1, v/v). Phospholipid subclasses were then separated from cholesterol and triglycerides on a silica thin-layer chromatography plate. Fatty acid methyl esters products were dissolved in heptane and injected onto a capillary Varian CP7420 100-m column with a Hewlett Packard 5890 gas chromatograph (GC) equipped with a HP6890A autosampler. Cases and matching controls were sent to the laboratory in the same batch and assayed concurrently. Lastly, laboratory personnel were blinded on the case-control status of each subject to enhance validity.
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10

Gas Chromatographic Analysis of Fatty Acids

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Lipids were extracted following the technique proposed by Folch et al. [44 (link)]. The conversion of lipids into FA methyl esters (FAMEs) was performed by acid-catalysed transesterification of total lipids according to the method of Christie [45 ]. The total lipid samples were transmethylated overnight in 2 mL of 2% sulphuric acid in methanol (plus 1 mL of toluene to dissolve neutral lipids) at 50 °C. Methyl esters were extracted twice in 5 mL of hexane–diethyl ether (1:1, v/v) after neutralisation with 2 mL of 2% KHCO3, dried under nitrogen and redissolved in 1 mL of iso-hexane. FAMEs were separated and quantified by gas-liquid chromatography in an SP™ 2560 flexible fused silica capillary column (length 100 m, internal diameter 0.25 mm, film thickness 0.20 mm SUPELCO) in a Hewlett–Packard 5890 gas chromatograph. The 140 °C oven temperature was initially increased at a rate of 3 °C min−1 to 230 °C, followed by 2 °C min−1, and then to 240 °C to be held for 12 min. The injector and flame ionisation detector were set at 260 °C. Helium was used as the carrier gas at a pressure of 300 kPa. Peaks were identified by comparing their retention times to appropriate FAME standards from the Sigma Chemical Company (St. Louis, MO, USA). Each component’s data were reported as a percentage of total content [8 (link),46 (link)].
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