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Microcal origin 6

Manufactured by Malvern Panalytical
Sourced in United States

Microcal Origin 6.0 is a high-performance microcalorimetry system designed for conducting thermal analysis on a wide range of samples. It provides accurate measurements of heat flow and enthalpy changes associated with physical and chemical processes in materials.

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11 protocols using microcal origin 6

1

Analyzing Cellular Responses in vitro

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Data shown are expressed as mean ± standard error of the mean (SEM) obtained from three independent experiments. Plots were constructed with Microcal™ Origin 6.0 software (Microcal Software Inc., Northampton, MA, USA). Statistical analysis was done with IBM® SPSS® software (IBM Corporation, Somer, NY, USA) by Student’s t-test and One-way ANOVA. Statistical significance was established when p < 0.05. Bonferroni post-hoc analysis was used for ANOVA.
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2

Patch-Clamp Analysis of VGCC Currents

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The whole-cell configuration of the patch clamp technique was used to record VGCC currents. In voltage–clamp mode, currents were evoked by a single depolarising step from a holding potential of −70 mV to +20 mV for a duration of 350 ms. In these experiments barium was used as the charge carrier, as barium is more permeant than Ca2+ through VGCCs and reduces Ca2+-induced inactivation. The external bath solution contained (mM): BaCl2 110, HEPES 10, Glucose 11, TEA 10 (pH adjusted to 7.4 with Ba(OH)2). The pipette solution contained (mM): Cesium glutamate 140, EGTA 10, MgCl2 2.5, MgATP 2.5, with pH adjusted to 7.4 with CsOH. Recordings were made with an Axopatch 200B amplifier (Axon Instruments, Union City, CA, USA) at room temperature (20–23 °C). Currents were filtered at 1 kHz (−3 dB, low-pass 8-pole Bessel filter, Frequency Devices model LP02; Scensys, Aylesbury, UK) and sampled at 5 kHz (Digidata 1322 A and pCLAMP 9.0 software; Molecular Devices, Sunnydale, CA, USA). Data from n=7 patches and at least 3 animals were analysed using paired Student's t-test with P<0.05 considered significant. Figures and analyses were made using MicroCal Origin 6.0 software (MicroCal Software, Northampton, MA, USA).
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3

Quantitative Analysis of Cell Signaling

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The data are expressed as mean ± s.e.m., with “n” denoting the number of independent experiments. Two groups were compared by student's t-test and two-tail p-value. In experiments where the effects of different treatments were assessed on normalized data, non-parametric ANOVA Kruskal-Wallis tests were performed. Tests with significance of p < 0.05 were followed by a Dunn's multiple comparison post-hoc test using the GraphPad Prism version 5.00 (San Diego, CA, USA). Unless stated otherwise, significance as compared to control condition based on the raw data (before normalization) was assessed by two-tailed Wilcoxon signed-ranked tests. The level of significance was set at p < 0.05. Graphics were prepared using Microcal Origin 6.0 (Northampton, MA, USA) and Adobe Illustrator 10 (San Jose, CA, USA).
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4

Vascular Morphology and Function Analysis

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Morphological properties of MAs from NT rats and SHRs as well as NT MAs treated with NTC miR or miR153 were studied using Pressure Servo System PS/200 (Living Systems Instrumentations, Burlington, VT, USA). The structural properties of the segments and responses to the Kv7 activator, S1 (NeuroSearch A/S, Ballerup, Denmark) were recorded and acquired with DMK 41AU02 Monochrome Industrial Camera (Imaging Source, Bremen, Germany) hosted by a PC running MyoVIEW II software (Danish Myo Technology, Aarhus, Denmark). Data were analysed using MyoVIEW II and MicroCal Origin 6.0 (MicroCal Software, Northampton, MA, USA). Isometric tension was recorded on NT MAs or MCAs transfected with either mir153 or NTC miR in a wire myograph (Danish Myo Technology). Mesenteric vessels were pre-constricted with 1 µM U46619 (Sigma Aldrich) and a concentration effect curve to the Kv7.2–7.5 activators ML213 (HelloBio, Bristol, UK), ICA-069673 (HelloBio), the β-adrenoceptor agonist isoprenaline (Sigma Aldrich), or the Kv7.1-specific activator RL-3 (Tocris, Bristol, UK) as well as a relaxation response to 1 µM nicardipine (Sigma Aldrich) were obtained. Relaxant responses to S1 or ML213 were also assessed in MCAs transfected with miR153 or NTC and pre-constricted with 100 nM U46619. Data were recorded and analysed using LabChart® 7 (ADInstruments, Dunedin, New Zealand).
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5

Raman Spectroscopic Analysis of Dentin

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Spectra of the samples were obtained using an FT-Raman Spectrometer (RFS 100/S; Bruker Inc. Karlsruhe, Germany). To excite the spectra, the defocused 1064.1 nm line of an Nd:YAG laser source was used. The maximum incident laser power on the sample surface was approximately 150 mW and the spectrum resolution was 4 cm-1.
The samples were positioned in the sample holder compartment and an IR352 lens collected radiation scattered through 90° on the dentin surface. For each sample, one spectrum was collected at a central point on the cervical dentin root. In order to obtain a good signal to noise ratio, 100 scans were co-added for each spectra. Five spectra were obtained in each group.
The changes in the organic dentin components were analyzed by comparing the integrated areas of the Raman peak centered at 2940 cm1 . The integrated areas of the peaks were calculated with the software Microcal Origin 6.0 (Microcal Software, Inc., Northampton, MA, USA).
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6

Blastocyst and Hatching Rate Analysis

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All data analysis was performed using GraphPad Instat Software Inc., USA. Blastocyst rate and hatching rate is represented as percentage data and was evaluated by Chi Square statistics. The different variables are expressed as Mean ± SEM (Standard error of mean). Student’s t-test was applied to normally distributed data and Mann-Whitney U-test was applied to data that did not conform to normal distribution. P value < 0.05 was considered statistically significant. The graphs were plotted using Microcal Origin 6.0 (USA).
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7

Statistical Methods for EM and Morphometric Analyses

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The statistical significance of data collected by EM analyses was determined using a Student's t test (Microcal Origin® 6.0; Microcal Software, Inc., Northampton, MA), while statistical significance of percentage values was investigated using a chi‐squared test (Microsoft® Office Excel® 2007; Microsoft Corporation). Statistical analysis of morphometric, densitometric, and gene expression datasets was performed with GraphPad Prism v5.0 software (GraphPad Software, Inc., La Jolla, CA); statistical significance of average numbers was determined using Wilcoxon matched pairs test. Values of P < 0.05 were considered significant.
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8

Kinetic and Fluorescence Analysis of ATPase Activity

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The initial velocity of ATP hydrolysis was calculated at different ATP concentrations from the slope of the linear portion of the NADH absorbance decay [48 (link)]. The observed sigmoid dependence on the velocity of ATP hydrolysis with the substrate concentration was analyzed fitting the data to the Hill equation (Equation (1)) by nonlinear regression using the iterative software Microcal Origin 6.0® (Northampton, MA, USA).
v=VmaxSnS0.5n+Sn
where v is the initial rate, Vmax is the maximum velocity of ATP hydrolysis, S is the ATP concentration, S0.5 is the ATP concentration when v = 0.5Vmax, and n is the Hill number.
The H+-ATPase steady-state fluorescence intensity at λ of 332 nm was plotted against nucleotide concentration (AMP-PCP and ADP). The fluorescence data were fitted to Equation (2) by nonlinear regression [22 (link)]. Equation (2) describes the binding of the substrate considering the existence of simple symmetric cooperativity in the protein [50 (link)].
(F0F)=ΔFmaxSnKdn+Sn
where (F0F) represents the quenching of steady-state fluorescence at λ of 332 nm at a given nucleotide concentration S. ΔFmax is the maximum change in fluorescence intensity generated by substrate binding; n is the number of binding sites involved in the interacting unit; and Kd is the average dissociation constant of the nucleotide from the binding site [50 (link)].
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9

Quantifying Protein Expression Levels

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Results are expressed as mean ± standard deviation (SD). Values are at least from duplicate experiments. Statistics and graphs were obtained using the software Microcal Origin 6.0 (Microcal Software, Inc., Northampton, MA).
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10

Cytotoxicity Assay Protocol

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Data are average results obtained by means of five replicates and independent experiments and are presented as average ± standard errors of the mean (SEM). Data were subjected to analysis of variance (ANOVA) with significant differences between means identified by GLM procedures. Results are given in the text as probability values, with p < 0.05 adopted as the criterion of significance. The LD50 calculated by PROBIT analysis based on the percentage of inhibition obtained at each concentration of the samples. LD50 is the concentration that produces 50% mortality. Complete statistical analysis was performed by means of the Micro-Cal Origin 6.1 statistical and graphs PC program.
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