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7 protocols using human serum

1

Lentiviral Vector-Mediated Gene Transduction of T-Cells

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The bidirectional SIN.LV.PGK.BACH2 and SIN.LV.PGK.STAT5B plasmid constructs were generated using Gateway Technology (for details refer to Supplementary Methods). All concentrated VSV.G-pseudotyped LV stocks were produced by transient transfection of 293 T cells (CRL-3216, ATCC), as previously reported7 (link).
For transduction, Naïve T lymphocytes were pre-activated for 24 h in X-VIVO (Lonza), 5% human serum (Euroclone), in presence of anti-CD3/CD28 activating beads (Dynabeads Human T cell activator CD3/CD28, Life Technologies). Treg and Teff cells were pre-activated for 24 h in X-VIVO (Lonza), 5% human serum (Euroclone), in presence of Human Treg Expander beads (Life Technologies). Cells were infected with the indicated LV at MOI 20.
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2

Establishment of MLL-AF9 AML Xenografts

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Primary MLL-AF9-expressing cells were obtained from BM samples of diagnosed AML pediatric patients stored in the BioBank of the laboratory of Pediatric Hematology of the University Hospital of Padua, (Italy) according to the guidelines of the local ethics committee. Initial AML xenografts were established by tail vein injection with 8 × 106 primary cells suspended in 300 μl of PBS in 6- to 8-week-old NSG mice, which were purchased from Charles River (Wilmington, MA, USA). All animal experiments were performed in accordance with institutional guidelines and established protocols [53 (link)]. Engraftment was monitored by weekly blood collections and flow cytometry analysis with antihuman CD45 (BD Biosciences). The engraftment rate was defined by the number of days required for the transplanted human CD45+ cells to reach at least 20% in the peripheral blood. Human leukemic cells from the spleens of engrafted mice were collected and cultivated in RPMI supplemented with 10% Human serum (Euroclone), antibiotics, and cytokines SCF, FLT-3L and TPO (40 ng/ml for each), IL-3 and IL-6 (20 ng/ml for each). (All cytokines were obtained from Inalco, Milan, Italy). For ex vivo experiments, two independent biological replicates were performed.
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3

Cultivation and Transduction of Leukemic Cell Lines

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Leukemic cell lines NALM-6 and BV173 were purchased from the American Type Culture Collection (ATCC) and cultured in RPMI 1640 (BioWhittaker) supplemented with 10% FBS (Lonza), 100 IU/mL penicillin/streptomycin, and glutamine. The ALL-CM cell line was provided by Fred Falkenburg (Leiden University Medical Center, Leiden, The Netherlands) and maintained in culture in X-VIVO (Lonza) with 3% human serum (Euroclone) and 100 IU/mL penicillin/streptomycin. For in vivo experiments, the NALM-6 cell line was transduced with a lentiviral vector encoding the secreted Lucia luciferase (Lucia+NGFR+ NALM-6), as previously reported (57 (link)).
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4

CD28-Dependent T Cell Activation Assay

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Human primary T cells were enriched from PBMCs of HD or T1D patients and cultured in RPMI 1640 supplemented with 5% human serum (Euroclone, UK), l-glutamine, penicillin, and streptomycin. CH7C17 Jurkat T cell line expressing CD28WT has been previously described (26 (link)). Murine L cells transfected with human, HLA-DRB1*0101 (5-3.1), and 5-3.1 co-transfected with B7.1/CD80 (5-3.1/B7) have been previously described (10 (link), 27 (link)). The following Abs were used: goat anti-PIP5Kα (N-20), goat anti-PIP5Kα (C17), and mouse anti-HA (Santa Cruz Biotechnology, CA, USA); mouse anti-CD28.2, mouse anti-CD3 (UCHT1), and goat anti-mouse (GAM) (BD Biosciences, Milan, Italy). PI4,5P2, PI4P, PMA, and A23871 were purchased from Sigma-Aldrich (Milan, Italy) and SEB were from Toxin Technology (Sarasota, FL, USA). ISA-2011B has been previously described (24 (link)). PIP5K small molecule inhibitor was from Cancer Research Technology (CRT, London, UK).
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5

Culturing Leukemic Cell Lines for In Vivo Experiments

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B-ALL leukemic cell lines NALM-6 and BV173 were purchased from the American Type Culture Collection and cultured in Roswell Park Memorial Institute (RPMI) 1640 (Euroclone) supplemented with 10% fetal bovine serum (FBS) (Euroclone), 100 IU/mL penicillin/streptomycin (Euroclone) and glutamine (Euroclone). ALL-CM cell line was kindly provided by Professor Fred Falkenburg (Leiden University Medical Center) and kept in culture in X-VIVO (Euroclone) with 3% human serum (Euroclone) and 100 IU/mL penicillin/streptomycin. For in vivo experiments, NALM-6 cells were transduced with a bidirectional lentiviral vector (LV) including the Gaussia luciferase LUCIA (InvivoGen) in sense and the low-affinity nerve growth factor receptor (LNGFR) selection marker in antisense (Lucia+/NGFR+/NALM-6), as previously reported.29 (link) About 293 T cells were used as packaging line for LV production and cultured in IMDM medium (Iscove’s Modified Dulbecco’s Medium) supplemented with 10% FBS, 1% penicillin/streptomycin (100 U/mL, 0,1 mg/mL, Euroclone) and 1% glutamine (2 mM, Euroclone).
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6

Dissecting IgG and IgM Roles in MAVER-1 Cells

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MAVER-1 cells were resuspended at 5 × 105 cells/well in 100 μl RPMI 1640 medium with and without 1% or 10% (vol/vol) FBS, 10% (vol/vol) human serum (Euro Clone), or PBS and with and without human IgG (500 nM), human IgG Fab (2 μM), human IgG Fc (4 μM), and IgM (50 nM); they were then stimulated with 1 μM SpA or SpAMUT for 2 h at 37°C (all purified human antibodies were purchased from Sigma-Aldrich). The complement in human serum was inactivated by heating the sample in a water bath to 56°C and holding it there for 30 min. HiTrap (1-ml) protein G columns (GE Healthcare) were used as per the manufacturer’s protocol to remove the immunoglobulin component of human serum.
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7

Isolation and Expansion of CD4+ T Cells

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CD4+ T cells were selected from peripheral blood mononuclear cells of healthy individuals by magnetic bead separation using the CD4+ T-Cell Isolation Kit (Miltenyi Biotec GmbH; cat. #130-096-533). Briefly, purified T cells were stimulated with leukemic blasts at diagnosis at an effector:target ratio of 1:2. Cells were cultured in Iscove's modified Dulbecco's media supplemented with 1% glutamine, 1% penicillin/streptomycin, 10% human serum (Euroclone; cat. #ECB2072L), and IL2 (Novartis; cat. #27131010) at a final concentration of 150 UI/mL. IL2 was replaced every 3 to 4 days, and responders were restimulated every 7 days and tested for functional readouts or infused into PDXs after at least two rounds of stimulation.
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