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29 protocols using fv300 confocal microscope

1

Quantitative Neuronal Immunofluorescence Analysis

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Images from immunofluorescence assays were obtained under an Olympus-IX81 microscope and a FV300 Olympus Confocal microscope (Olympus CO, Tokyo, Japan). Images were analyzed with ImageJ software (ImageJ, NIH, Bethesda, MA, USA)1. Mean fluorescence was determined in 600× field images. Immunofluorescence of each neuronal body was estimated by ImageJ. To evaluate changes in NMDAR subunits at dendrites, 1000× images were used. Puncta were counted in isolated dendrites and were normalized to 10 μm. Each experiment was performed in duplicate in three independent cultures.
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2

Striatum Immunofluorescence Staining

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Brain sections containing the striatum from 3 animals of each experimental condition were permeabilized with 0.1% Triton X-100, blocked with 5% BSA and then incubated for 2 h at room temperature (RT) with 1:300 dilution of an anti-rat IgG conjugated to FITC (Pierce). After that, sections were washed 3 times with PBS, mounted in 1:1 glycerol-PBS containing 1 μg/ml Hoechst 33342 and imaged in a FV300 Olympus confocal microscope provided with 405, 488 and 633 nm lasers. IgG fluorescence was analyzed by using the 488 nm laser and corresponding filters. As negative controls the rat IgG antibody was omitted.
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3

Quantifying Fluorescence Signals in Cells

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Fluorescent probes and immunofluorescence were imaged in an upright FV300 Olympus confocal microscope provided with 405, 488, 546, and 633 nm lasers. 2048 × 2048 microphotographs of 5–7 representative areas of each culture were taken with all acquisition parameters identical for LP and HP cells or SC sections. Once pictures were obtained, DAPI + cells were counted. To assess signal intensity, the mean gray value (MGV, intensity per number of pixels) was measured with FIJI/ImageJ. A signal was considered positive when it at least doubled the background. Normalized fluorescence was determined by subtracting the MGV of the background to the value determined inside the positive signal.
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4

Immunohistochemical Analyses of Striatal Markers

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Striatum slices (30 μm) prepared in a Leica 1000S vibratome (Nussloch, Germany) were incubated with the antibodies rabbit anti-myelin basic protein (MBP; 1:400, Abcam, Cambridge, UK), rabbit anti-ionized calcium-binding adapter molecule 1 (Iba1; 1:1000, Wako Pure Chemical Industries, Japan), and rabbit anti-neuroglycan-2 (NG2; 1:200, Abcam, Cambridge, UK) as described [12 (link)]. After mounting the slices in Fluoroshield™ (Sigma-Aldrich, MO, USA), pictures were taken using a FV300 Olympus confocal microscope (Tokyo, Japan). For each animal and staining procedure, 3 sections were stained. In a separate analysis, three brain slices were directly stained at room temperature with 300 μL of green FluoromyelinTM (1:300 from the stock solution) (Thermo Fisher Scientific, Waltham, MA, USA) for 30 min. Sections were rinsed, mounted in Fluoroshield™ (Sigma-Aldrich, MO, USA) and imaged using the same microscope. Quantification of fluorescence was performed as described [25 (link),26 (link)].
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5

Spinal Cord Apoptosis after Injury

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We investigated apoptotic cell death at 10 weeks after surgery. The 30 rats for this investigation were perfused transcardially with 4% paraformaldehyde in PBS. The C5–C6 segment of the spinal cord was dissected from each animal, embedded in paraffin, and sectioned. Three cross-sections (thickness ¼ 5 mm, gap interval ¼ 50 mm) per rat were stained with the In-Situ Cell Death Detection Kit, POD (Roche, Basel, Switzerland) according to the manufacturer’s recommendations. The TUNEL signal was observed under an FV300 confocal microscope (Olympus, Tokyo, Japan). Nuclei were counterstained with 4′,6-diamidino-2-phenylindole (DAPI, 1: 5000 in PBS) (Molecular Probes, Eugene, OR). The means of the ratios of apoptotic to total nuclei were calculated in the anterior horn of each animal.
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6

Intracellular Localization of Tat-HSP22

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To detect the intracellular distribution of transduced Tat-HSP22 into HT-22, fluorescence microscopy was performed as described previously [24 (link)]. After exposure of HT-22 to Tat-HSP22 (5 μM) for 2 h, the cells were washed twice with PBS. Subsequently, the cells were staining with Histidine primary Ab and Alexa Fluor 488-conjugated secondary Ab. After washing, the cells were staining with DAPI (Roche, Mannheim, Germany) and observed under a FV-300 confocal microscope (Olympus, Tokyo, Japan).
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Calcium Imaging in Larval Zebrafish

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SAGFF(LF)134A; Tg(UAS: GCaMP3) larval zebrafish were anaesthetized with Tricaine and mounted on a cover glass-bottomed culture dish in a drop of 1% LMP agarose in H2O. The agarose applied to the anus was removed to expel the bolus. For the time-laps Ca2+ imaging of the smooth muscles (Figs. 2 and 5), we used a FV300 confocal microscope (Olympus) with a water emersion 20 × /0.75 or a water emersion 40 × /0.80 lens. Each z-projection image was obtained from 7 z-slices by 5 mm increment (Confocal aperture: 5) at 6 s interval, and the duration of each experiment ranged from 13 to 20 min. For the time-laps Ca2+ imaging of the larva expressing heat-shock induced GCaMP3 (Fig. 3), we used an SP8 confocal microscope (Leica) with a glycerol emersion 63x/1.30 lens. Each z-projection image was obtained from 16 z-slices by 5 mm increment at 12 s interval for about 8 min. Image post-processing was done with Image J.
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8

Ratiometric Chloride Imaging in Neurons

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The cyan and yellow fluorescent protein (CFP-YFP) based ratiometric Cl-Sensor protein (Markova et al., 2008 (link)) was delivered to CA3 pyramidal neurons in organotypic hippocampal slice cultures by biolistic transfection (Bio-Rad). At 2–3 d after transfection, Cl-Sensor protein expressing neurons were imaged using an FV300 confocal microscope (Olympus), custom-converted for multiphoton imaging, and equipped with a MaiTai-HP Ti:sapphire femtosecond pulsed laser (Newport Spectra-Physics). Images were acquired using Fluoview software (version 5.0, Olympus). Cells were excited at 850 nm and a 510 nm dichroic mirror was used to separate emitted light into CFP and YFP channels, which were filtered at 460–500 nm and 520–550 nm, respectively, and detected simultaneously using two externally mounted PMTs (Hamamatsu). Image stacks were flat-field corrected, collapsed along the z-plane, background subtracted, and the YFP/CFP ratio was calculated by dividing the respective images on a pixel-by-pixel basis. The ratio was calibrated to absolute intracellular chloride values using the K+/H+ exchanger nigericin and the Cl/OH exchanger tributyltinchloride (both at 20 μm) in a high K+, HEPES-buffered solution at pH 7.35, as described previously (Boyarsky et al., 1988 (link); Kuner and Augustine, 2000 (link)).
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9

Hematoxylin and Eosin Staining Protocol

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For HE staining, 5-µm transverse sections (8 µm) of tissue at 7 and 14 days post surgery in each group were deparaffinized and put into fresh xylene for 15 min twice. Sections were rehydrated in 100% alcohol for 5 min twice, then 95% alcohol and 70% alcohol once for 3 min. Subsequently, sections were washed briefly in ddH2O, stained in Harris hematoxylin (Beyotime Institute of Biotechnology) solution for 5 min. Sections were then washed in running tap water for 8 min and differentiated in 1% acid alcohol for 30 sec, blued in 0.2% ammonia water for 30 sec. The sections were washed in running tap water for 5 min and rinsed in 95% alcohol ~15 times. Sections were stained in Eosin-Phloxine (Beyotime Institute of Biotechnology) solution for 1 min then dehydrated through 95 and 100% alcohol (5 min each) and cleared in two changes of xylene (5 min each). Finally, the sections were mounted with mounting medium (Beyotime Institute of Biotechnology). Images were captured using a FV 300 confocal microscope (Olympus Corporation, Tokyo, Japan).
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10

Microglial Autophagy Signaling in Ischemic Penumbra

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Immuno uorescent staining was used to visualize the microglial expression of Sphk1 (NOVUS Biologicals, JA31-14), MAPLC3 II (Cell Signaling Technology, D11) , SQSTM1/p62 (Abcam, ab155686), and TRAF2 (Abcam, ab126758) in our experimental system. Brie y, we initially used xylene to depara nize ischemic penumbra tissue sections from model animals. Sections were then treated with citric acid to facilitate antigen retrieval, followed by three washes in PBS. Samples were next blocked for 1 h using serum, followed by probing overnight at 4°C with appropriate primary antibodies, further washing, and probing for 1 h at room temperature using uorescently conjugated secondary antibodies. Samples were then imaged via Olympus FV300 confocal microscope (200×). To ensure accuracy, 4-5 elds of view in different cortical regions were selected at random, with positive areas being averaged across these regions.
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