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10 protocols using sc 7020

1

Immunoprecipitation of Phosphotyrosine Proteins

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Whole cell lysates (1 mg) were incubated with a cocktail of phosphotyrosine antibodies (pY20, sc-508, sc-7020, pY99, Santa Cruz Biotechnology; 4G10, 05-321, EMD Millipore) and rotated end-over-end at 4°C overnight. Protein A/G agarose beads (Invitrogen) were washed with lysis buffer, added to the lysates, and rotated end-over-end at 4°C for 2 hrs. Beads were collected by centrifugation, and a sample of the supernatant was kept as a pass-through. The beads were washed 3 × with lysis buffer, and proteins were eluted by heating the samples to 100°C for 5 minutes in 2 × SDS sample buffer. The immunoprecipitated proteins were separated by SDS-PAGE, transferred to PVDF membranes, and probed with the EGFR, ERBB2, and ERBB3 antibodies (Cell Signaling Technology).
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2

Comprehensive Antibody Panel for Cell Analysis

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Anti-β-actin (1:1,000, A5441, Sigma-aldrich), anti-p-Tyr antibody (1:500, sc-7020, Santa Cruz), anti-VEGF-C antibody (1:500, sc-374628, Santa Cruz), anti-VEGFR3 antibody (1:500, sc-365748, Santa Cruz), anti-iNOS antibody (1:500, ab3523, Abcam), anti-IL-1β antibody (1:500, ab9722, Abcam), anti-TNF-α antibody (1:200, GTX110520, GeneTex), anti-TGF-β antibody (1:200, ab64715, Abcam), anti-CCL28 antibody (1:500, MAB717, R&D systems), anti-Podoplanin antibody (1:200, sc-166906, Santa Cruz), anti-CD31 antibody (1:200, 550274, BD biosciences), anti-LYVE-1 antibody (1:500, NB100–725B, NOVUS biologicals), anti-vWF antibody (1:100, A0082, Agilent), FITC anti-CD4 antibody (1:100, 561828, BD Biosciences), FITC Neutrophil antibody (1:100, ab53453, Abcam), PE anti-CD34 antibody (1:100, 551387, BD Biosciences), APC anti-F4/80 antibody (1:200, 123116, BioLegend), FITC anti-CD16/32 antibody (1:200, 101306, BioLegend), PE anti-CD11b antibody (1:200, 557397, BD biosciences), anti-CD45 antibody (1:400, 20103–1-AP, Proteintech).
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3

Immunoprecipitation and Western Blot Analysis of EGFR

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AGS cell extract was prepared and combined with anti-p-Tyr antibody (sc-7020, Santa Cruz Biotechnology) and protein G/A. The resultant mixture was immobilized on agarose in RIPA buffer (25 mM Tris–HCl (pH 7.5), 150 mM NaCl, 1% Triton X-100, 1 mM EDTA, 1 mM EGTA, 1 mM PMSF, 0.25% Nonidet P-40, and 0.5% sodium deoxycholate) and incubated overnight at 4 °C. The protein G-antibody-antigen conjugates were collected by washing the agarose three times with ice-cooled RIPA buffer. The final pellet was resuspended in 50 μL of SDS-sample buffer and boiled for 5 min. The preparation was subjected to Western blot analysis with anti-EGFR antibody (sc-31155, Santa Cruz Biotechnology).
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4

Immunoblotting Characterization of Gastric Proteins

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Cells were washed with PBS and lysed with Laemmli’s buffer, sonicated, and separated on SDS–PAGE gels followed by electro-transfer to nitrocellulose membranes. Antibodies used for western blot analysis were: anti-CagA (1:2000, sc-25766, Santa Cruz Biotechnology), anti-P-Tyr (1:1000, sc-7020, Santa Cruz Biotechnology), anti-GKN1 (1:500, HPA047684, Atlas antibodies), anti-GKN2 (1:11,000, ab188866, Abcam), anti-MUC5AC (1:1000, MA5-12178, Thermo Fisher Scientific), anti-MUC6 (1:500, AM10120SU-N, Acris), anti-α-tubulin (1:3000, T6074, Sigma-Aldrich), anti-β-actin (1:3000, A2228, Sigma-Aldrich), anti-mouse HRP (1:10,000; NA931, GE Healthcare), anti-rabbit HRP (1:10,000; NA934, GE Healthcare). HPR signals were detected using a solution of luminol (0.25 mg ml−1, A8511-5G, Sigma-Aldrich) and p-coumaric acid (1.1 mg ml−1, sc-215648A, Santa Cruz Biotechnologies) with an ImageQuant LAS 4000 CCD camera (GE Healthcare). Quantification of western blots was performed with ImageJ. Uncropped images of immunoblots are included as Source Data.
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5

Immunoprecipitation and Immunoblotting of Hypoxia-Sensitive Kv Channels

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The smooth muscle layer of resistance PA rings was dissected. Total protein extracts and protein concentrations were prepared as previously described (2 (link)).
Immunoprecipitations were performed as follows: Lysates containing 0.5 mg total protein were incubated with 10 μg Kv1.2 (APC-010; Alomone Lab, Israel), Kv1.5 (APC-004), Kv2.1 (APC-012), Kv3.1b (APC-014), or Kv9.3 (HPA014864; Sigma, USA) monoclonal antibody overnight at 4°C, which were then captured by Protein A-Sepharose CL-4B beads (Santa Cruz Biotechnology, USA). The beads were collected by centrifugation at 200 g for 3 min at 4°C followed by 3 washes with lysis buffer. After the final wash, the immunoprecipitates were subjected to western blot analyses.
Immunoblotting was performed to detect phosphotyrosine levels in hypoxia-related Kv channels as described previously (24 (link)). Membranes were immunoblotted using antibodies to p-Tyr (SC-7020, Santa Cruz Biotechnology) at 4°C overnight. The signal intensity of the immunoreactive p-Tyr bands from the membrane protein was normalized to Kv channel expression. Fluorescent secondary antibodies (Rockland, USA) were visualized using an Odyssey scanner (LI-COR, USA).
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6

Investigating ErbB Signaling and Wnt Pathways

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Tamoxifen (T5648) was purchased from Sigma-Aldrich. Recombinant human NRG1-β1/HRG1-β1 (396-HB) and recombinant human Wnt3a (5036-WN) were from R&D Systems. mouse monoclonal antibody against β-catenin (610154) and rat monoclonal antibody against CD31 (PECAM1) (553370) were from BD Biosciences. Rabbit polyclonal antibody against GFP (ab6556) was from Abcam. TO-PRO®-3 Iodide (642/661) (T3605) was from Invitrogen. Rabbit polyclonal antibody against ErbB2 (Neu) (C-18) (sc-284), rabbit polyclonal antibody against ErbB4 (C-18) (sc-283) and mouse monoclonal antibody against phosphorylated tyrosine (PY99) (sc-7020) were from Santa Cruz Biotechnology. Rabbit monoclonal antibody against GAPDH (14C10) (#2118) was from Cell Signaling Technology. Immunoprecipitation beads (Protein A Sepharose 4 Fast Flow (17-5280)) was from GE-Healthcare. Magnetic-activated cell sorting (MACS) beads, anti-rat IgG microbeads (130-048), were from Miltenyi Biotec. Secondary antibodies conjugated to Alexa Fluor 488 and Alexa Fluor 594 were from Molecular Probes. HypoxyprobeTM-1 Omni Kit (HP3-100) was from Hypoxyprobe Inc.
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7

Immunocytochemistry of Stimulated Sperm

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We performed immunocytochemistry after electrical stimulation of human spermatozoa and washed and fixed them in cool methanol for 15 min at 4°C. Electrically stimulated spermatozoa were stained for intact acrosomal regions with pisum sativum agglutinin–fluorescein isothiocyanate dye (PSA–FITC conjugate: L0770, Sigma–Aldrich, US), and mitochondrial protein phosphorylation of sperm tail was detected using an anti-tyrosine phosphorylation antibody (anti-p-Tyr (pY99); SC-7020, Santa Cruz Biotech, USA). The primary antibody was an anti-pTyr(pY99) monoclonal mouse antibody in diluted phosphate buffer solution (PBS) with 0.01% bovine serum albumin (BSA), and was incubated 16hours at 4°C. The sample was then washed and treated for 1 h at room temperature with a secondary antibody, such as Cy5-labeled anti-mouse antibody with PSA–FITC (100 μg/mL). We finished the processing with nuclear count staining with 4’6’-diamidino-2-phenylindole (DAPI), and mounted the specimen with anti-fade solution (Vector shield® P100, USA) followed by imaging with a confocal microscope (ZISS M880, Germany). All images were processed and analysed for intensity of each red signal using the ZESS2016 software (ZEISS, Germany).
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8

Isolation and Imaging of Rat PASMCs

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PASMCs were dispersed from 12-week-old rat resistance PAs. After enzymatic isolation, PASMCs were cultured at 4°C in Dulbecco's Modified Eagle's Medium (Corning, USA) supplemented with 15% fetal bovine serum for 2 h to allow cells to adhere to the plates.
Confocal microscopy imaging was performed with an Olympus confocal laser scanning microscope (BX61W1-FV1000, Japan). The Kv1.5 primary antibody (1:100; APC-150; Alomone Lab) and p-Tyr (1:100, SC-7020, Santa Cruz Biotechnology) were used as described previously. The secondary antibodies tetramethylrhodamine isothiocyanate (1:200; ZF-0316; ZSGB) and fluorescein isothiocyanate (1:150; A0568; Beyotime, China) were used. Nuclear staining was performed using 4′,6′-diamidino-2-phenylindole dihydrochloride (DAPI; 100 nM; Sigma) in fixed cells as previously described. Images of cells were analyzed using Image Pro Plus software version 5.0 (Media Cybernetics, USA).
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9

Autophagy Regulation in Host-Pathogen Interactions

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Rapamycin (Rapa, R8781), 3-methyladenine (3-MA, M9281), bafilomycin A1 (Baf-A1, B1793), antibodies against ATG12 (WH0009140M1), MAP1LC3B (L7543), and ATG5 (WH0009474M1) were purchased from Sigma-Aldrich (Shanghai, CHINA), and MK-2206 2HCL (S1078) purchased from Selleckchem (Houston, TX, USA). Antibodies against Akt (9272), mTOR (2972), AMPK (2532), phospho-Akt (Ser473) (4060), LAMP1 (9091), phospho-mTOR (Ser2448) (5536), phospho-S6 ribosomal protein (Ser235/236) (2211), ribosomal protein (2217), phospho-c-Met (Y1234/Y1235) (4033), and c-Met (4560) were obtained from Cell Signaling Technology (Beverly, MA, USA), whereas antibodies against β-actin (sc-10731), VacA (sc-25790), CagA (sc-17450), phospho-tyrosine (PY99) (sc-7020) and SQSTM1 (sc-28359), and siRNAs specific for SQSTM1 (human, sc-29679), ATG12 (human, sc-72578), c-Met (human, sc-29397), and ATG5 (human, sc-41445), along with a control siRNA (sc-44230) were obtained from Santa Cruz Biotechnology (CA, USA).
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10

Antibody Characterization in Animal Studies

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Primary antibodies used in animal studies were listed as follows: Na+/K+-ATPase α 1 subunit (05–369, Millipore, CA, USA), glucose transporter 4 (Glut4, 2213, Cell Signaling Technology, MA, USA), insulin receptor substrate 1 (IRS1, sc-559, TX, Santa Cruz Biotechnology), phosphotyrosine (sc-7020, Santa Cruz Biotechnology, USA), phosphorylated AS160 (Tyr642) (4288, Cell Signaling Technology), total AS160 (07–741 Millipore), tumor necrosis factor (TNFα, ab6671, Abcam, MA, USA), ED-1 (MCA341, Serotec, Oxford, UK), angiotensinogen (AGT, 28101, IBL, Gunma, Japan), AGT (A6279, ABclonal, Wuhan, China), Ang II (T-4007, Peninsula Laboratories, CA, USA), dystrophin (ab129996, Abcam), adiponectin (ab22554, Abcam), CGRP (GTX16211, Gene Tex, CA, USA), tyrosine hydroxylase (TH, MAB318, Millipore), c-fos (ab209794, Abcam), Nox2 (ab129068, Abcam), p22phox (sc-271,968, Santa Cruz Biotechnology), α1-adrenergic receptor (AR) (ab3462, Abcam), α2-adrenergic AR (CA1003, Cell Application, CA, USA), β1-AR (ab3442, Abcam), β2-AR (ab182136, Abcam), β3-AR (sc-1473, Santa Cruz Biotechnology). Secondary antibodies were purchased from Cell Signaling Technology.
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