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10 protocols using cd34 biotin

1

Lung Cell Isolation and FACS Analysis

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Lung cell suspensions were prepared using an elastase digestion and stained for fluorescence-activated cell sorting (FACS), as previously described (20 (link)). Briefly, cells were resuspended in Hanks' balanced saline solution buffer supplemented with 2% fetal bovine serum, 0.1 mM EDTA, 10 mM HEPES, 100 IU/ml penicillin and 100 µg/ml streptomycin (HBSS+). Cells were then stained with the primary antibodies on ice for 45 min. The following antibodies were employed: EpCAM-PE-Cy7 (25-5791-80, 1:100), CD31-Biotin (13-0311-81, 1:40), CD34-Biotin (13-0341-81, 1:10), CD45-Biotin (13-0451-81, 1:100), Sca-1-APC (17-5981-81, 1:100), and CD24-PE (12-0242-81, 1:20) (all from eBioscience, Inc., San Diego, CA, USA). Cells were subsequently stained with the secondary antibody on ice for 40 min using streptavidin-APC-Cy7 (47-4317-82, 1:100; eBioscience, Inc.). Dead cells were identified using 7-aminoactinomycin D staining (BD Biosciences, Franlkin Lakes, NJ, USA).
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2

Isolation and Characterization of Murine Epidermal Stem Cells

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Mouse tail skin was incubated in 0.25% Trypsin/EDTA overnight at 4°C and for 30 min at 37°C. Single cell solution was prepared by scraping and subsequent filtering with strainers (70 μm, followed by 40μm). Cells were stained with the following antibodies for 30 min on ice: CD34-biotin (1:50, eBioscience, 13–0341), Streptavidin-APC (1:100, BD Biosciences, 554067), α6-integrin-BUV395 (1:100, BD Biosciences, custom order) and Sca1-BV421 (1:100, BD Biosciences, 562729). The dead cells were excluded by using propidium iodide (P4864, Sigma Aldrich). FACS (Fluorescence-activated cell sorting) analyses were performed with FACS Aria (BD Biosciences). The data was processed with FlowJo software to measure the mean fluorescence intensity of basal markers. For the detection of apoptotic cells, cells were stained with PE Annexin V Apoptosis Detection Kit with 7-AAD (BioLegend) according to the manufacturer’s instructions.
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3

Isolation and Analysis of Mouse Skin Cells

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Mouse back skin was incubated in 0.25% trypsin/versene overnight at 4°C and for 30 min at 37°C. Single cell suspensions were prepared by scraping off the fat and subcutaneous tissue from the dermal side of the skin followed by enzymatic digestions and subsequent filtering with strainers (70 mm, followed by 40 mm). Cells were stained with the following antibodies for 30 min on ice: CD34-biotin (1:50, eBioscience), Streptavidin-APC (1:100, BD Biosciences) and α6-integrin-Pacific blue (1:100, BD Biosciences, custom order). Dead cells were excluded by propidium iodide (PI) (Sigma) staining. FACS (FACS Aria, BD Biosciences) were performed in the Cornell Flow Cytometry facility. FACS data were analyzed with the FlowJo software.
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4

Isolation and Characterization of Hair Follicle Stem Cells

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Dorsal skin of wild type control littermate and K14-sPLA2-IIA homozygous mice at PD21 and PD49 was harvested and scrapped for fat removal, followed by overnight incubation in 0.25% trypsin at 4 °C. FACS experiments were performed as described previously7 (link). Single cell suspension was obtained by first passing through 70 μm and then 40 μm cell strainers (BD Biosciences). Cells were stained with trypan blue and the hematocytometer chamber was used to count the cells. Further cells were stained by using the hair follicle stem cells markers: CD34-Biotin (eBiosciences), Streptavidin-APC (BD Pharmingen), and anti–α6-integrin-PE (BD Pharmingen). After washing cells were subjected to FACS acquisition using a FACS Aria and data was analyzed by using FACS DiVa software (BD Biosciences).
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5

Isolating Mouse Skin Cells

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Mouse back skin was minced and dissociated into single-cell suspension at 37°C for a total of two hours in the following enzymatic mixture: 2 mg/ml collagenase type I (Worthington), 1.5 mg/ml collagenase type II (Worthington), 2.5 mM Ca+2, 1 mM Mg+2 and 1% BSA in 1x Hank’s Balanced Salt Solution (HBSS). In addition, 1U/ml Dispase II (Stemcell Technologies) and 50 U/ml DNase I (Worthington) were added in the above mixture for the final 1 and 0.5 hours respectively. After two hours, enzymes activity was neutralized by the addition of serum-containing medium, followed by serial filtration through 70 and 40-micron strainers. The cell suspension was washed with 1x-PBS containing 5% FBS and sequentially stained with CD34-biotin (1:50, eBioscience) and Streptavidin-APC (1:100, BD Biosciences) antibodies for 30 minutes each, on ice. LIVE/DEAD™ Fixable Aqua Dead Cell Stain Kit (ThermoFisher) was used to label the dead cells. FACS (FACS Aria, BD Biosciences) was performed in the Cornell Flow Cytometry facility. FACS data were analyzed with the FlowJo (FlowJo™ Software, v10.5.0, BD Biosciences).
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6

Tumor Cell and Immune Cell Sorting

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TIC and immune cell populations were harvested from the same mice for each experiment. Tumor cell sub-populations were sorted by flow cytometry using CD34-biotin (eBioscience), CD45-FITC, PDGFRα-APC and CD31-PECy7 (Biolegend) antibodies followed by streptavidin-PE. TAMs were isolated using CD45-FITC, CD11b-PECy7 (Biolegend), and F4/80-biotin, followed by streptavidin-PE.
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7

Isolation and Characterization of Mouse Lung Cell Types

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A single-cell suspension was prepared by digestion of lung tissues from 6–10-week-old C57BL/6 mice with elastase and DNase I. Freshly isolated cells were suspended in Hanks balanced saline
solution (Solarbio, Beijing, China) with 2% fetal bovine serum (FBS, Gibco), 0.01% Penicillin- streptomycin (Gibco, USA) and 10 mM HEPES (Sigma). The primary antibodies used to stain cells
included CD24-PE (1:25, eBioscience, San Diego, CA, USA), EpCAM-PE-Cy7 (1:50, Biolegend, San Diego, CA, USA), CD31-biotin (1:50, eBioscience), CD45-biotin (1:100, eBioscience), CD34-biotin
(1:16, eBioscience), and Sca-1-APC (1:100, eBioscience). Then, the secondary antibody Streptavidin-APC-Cy7 (1:100, eBioscience) was used, followed by the addition of 7-amino-actinomycin D
(7-AAD, 1:20, eBioscience) to discriminate the dead cells. Mouse club and AT2 cells were sorted based on their surface expression pattern,
CD31CD34CD45EpCAM+CD24+Sca-1+ and
CD31CD34CD45EpCAM+CD24Sca-1, respectively.
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8

Isolation of Mouse Skin Stem Cells

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Mouse dorsal and ventral skin were dissected and the subcutaneous and fat tissues were removed from the dermal side of the skin. The skin was incubated in 0.25% trypsin/versene overnight at 4°C and for 30 min at 37°C. The single‐cell solution was prepared by scraping the epidermis and subsequent filtering with strainers (70 μm, followed by 40 μm). Cells were stained with the following antibodies for 30 min on ice: CD34‐biotin (1:50, eBioscience), Streptavidin‐APC (1:100, BD Biosciences), α6‐integrin‐BUV395 (1:100, BD Biosciences, custom order) and Sca1‐BV421 (1:100, BD Biosciences). The dead cells were excluded by staining with propidium iodide (Sigma‐Aldrich). Cell isolation was performed with FACS Aria (BD Biosciences), and the data were analyzed with the FlowJo software (BD, Franklin Lakes, NJ).
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9

Isolation and Analysis of Mouse Skin Cells

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Mouse back skin was incubated in 0.25% trypsin/versene overnight at 4°C and for 30 min at 37°C. Single cell suspensions were prepared by scraping off the fat and subcutaneous tissue from the dermal side of the skin followed by enzymatic digestions and subsequent filtering with strainers (70 mm, followed by 40 mm). Cells were stained with the following antibodies for 30 min on ice: CD34-biotin (1:50, eBioscience), Streptavidin-APC (1:100, BD Biosciences) and α6-integrin-Pacific blue (1:100, BD Biosciences, custom order). Dead cells were excluded by propidium iodide (PI) (Sigma) staining. FACS (FACS Aria, BD Biosciences) were performed in the Cornell Flow Cytometry facility. FACS data were analyzed with the FlowJo software.
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10

Immune Cell Profiling in Mouse Tumors

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TIC and immune cell populations were harvested from the same mice for each experiment. CD45+ immune cells were depleted from the tumor with anti-CD45-PE antibody and the anti-PE EasySep selection kit (StemCell). Tumor cell sub-populations were sorted by flow cytometry using CD34-biotin (eBioscience), anti-CD271 (Millipore) and CD45-FITC (Biolegend) antibodies followed by streptavidin-PE and anti-rabbit PECy7 (Invitrogen) antibodies. Immune cell population were sorted using CD45, CD3, CD4, CD8, NK1.1, CD19, CD11b (Biolegend), and CD68 (AbDserotec) conjugated to appropriate fluorophores. Stromal cell populations were sorted using CD31-PECy7 and PDGFRα-APC (Biolegend).
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