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12 protocols using xf glycolytic rate assay kit

1

Mitochondrial Metabolism in C2C12 Cells

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C2C12 cells were seeded at 12,000 cells/well in XFe96 Well plates (Seahorse Bioscience, Billerica, MA, USA). The cells were treated with different concentrations of CCG-1423 and 0.5% DMSO as control, for 24 h. Then, the cells were subjected to extracellular flux analysis using the XF Cell Mito Stress Test Kit (Agilent, 103015-100), XF Glycolytic Rate Assay Kit (Agilent, 103344-100), and XF Real-Time ATP Rate Assay (Agilent, 103592-100). The measurement was performed as previously described [64 (link),65 (link)].
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2

Mitochondrial and Glycolytic Flux Assay

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The oxygen consumption rate (OCR) under mitochondrial stress test assay and the proton efflux rate (PER) under glycolytic rate test assay were performed using the Seahorse XFe24 Extracellular Flux Analyzer (Agilent Technologies, Santa Clara, CA, USA). Mitochondrial stress and glycolytic rate test assays were performed using XF Cell Mito Stress Test kit (Agilent Technologies, #103015–100) and XF Glycolytic rate Assay Kit (Agilent Technologies, #103344–100), respectively. The assays were performed according to the manufacturer’s instructions. The H1299 cells (4 × 104 cells/well) were cultured in XF24 cell culture microplate (Agilent Technologies, #102340–100). For mitochondrial stress test assay, oligomycin (1.5 μM), carbonyl cyanide-4-(trifluoromethoxy) phenylhydrazone (FCCP, 2 μM) and antimycin A and rotenone mixture (0.5 μM) were added to cell culture plate for determining mitochondrial respiration including basal respiration, maximal respiration and spare respiratory capacity. For glycolytic rate test assay, antimycin A and rotenone mixture (0.5 μM) and 2-deoxy-D-glucose (50 mM) were added to cell culture plate for determining glycolytic flux including basal glycolysis and compensatory glycolysis.
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3

Valine Impacts C2C12 Metabolism

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C2C12 cells were seeded in XFe96 Well plates at a density of 1.2 × 104 cells/well (Seahorse Bioscience, Billerica, MA, USA). The cells were then treated with 1.0 m m concentration of valine for 24 h respectively. After valine treatment, Seahorse XFe96 Extracellular Flux Analyzer was used to measure OCR using XF Cell Mito Stress Test Kit (Agilent, Santa Clara, CA, USA; 103015-100) and extracellular acidification rate (ECAR) using XF Glycolytic Rate Assay Kit (Agilent, Santa Clara, CA, USA; 103344-100). For determination of ATP production rate from mitochondria and glycolysis, XF-Real-time ATP Assay Kit (Agilent, Santa Clara, CA, USA; 103592-100). All metabolic assays were performed following the procedure from the manufacturer.
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4

Extracellular Flux Analysis of Hepatocyte Metabolism

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Extracellular flux (XF) analysis deployed for real-time quantification of oxygen consumption rate (OCR) and the proton efflux rate (PER) with the Agilent Seahorse XF Cell Mito Stress Test kit and Agilent Seahorse XF Glycolytic Rate Assay kit, respectively. Both assays were formatted in Seahorse XF24 cell-culture microplates and performed as previously described [11 (link)]. HepG2 cells were seeded at a density of 2 × 104 cells per well in a total of 200 µL for 24 h. Cells were serum-starved for 8 h and treated with vehicle control, 100 nM thapsigargin, or 1 µg/mL tunicamycin for 16 h prior to the initiation of measurements. To assess the effect of the pharmacological regulation of the intracellular H2S levels, cells were co-treated with 100 µM NaHS, 100 µM HMPSNE, or 30 µM AOAA.
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5

Extracellular Acidification Rate Assay

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The experiment was performed according to the instructions of the XF Glycolytic Rate Assay Kit instructions (Agilent, Santa Clara, CA, USA). Briefly, LO2 cells were plated at 15,000 cells/well in 96-well Seahorse XF 96 assay plates overnight before exposure to FFA (1 mM) and drug treatment for 24 h. The extracellular acidification rate (ECAR) was measured using an XF 96 flux analyser (Agilent, Santa Clara, CA, USA). On the day of this assay, the culture medium was changed to unbuffered DMEM (DMEM supplemented with 25 mM glucose and 10 mM sodium pyruvate; pH 7.4) and the cells were incubated at 37 °C in a non-CO2 incubator for 1 h. LO2 cells were stimulated with rotenone, antimycin A (0.5 μM) and 2-DG (50 mM). Eight independent experiments were performed. ECAR was automatically calculated and recorded using Seahorse XFe-96 software.
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6

Glycolytic Rate Assay of KYSE Cells

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After treatment with artesunate for 48 h, KYSE150 and KYSE170 cells were plated in XF96 Cell Culture Microplates at an initial cellular density of 1 × 104 cells/well the day before determination. A Seahorse Extracellular Flux (XF96e) Analyzer and the Agilent Seahorse XF Glycolytic Rate Assay Kit were used to measure the extracellular acidification rate (ECAR), reflecting the glycolytic level of live EC cells. The specific experimental procedures were performed according to the manufacturer’s instructions.
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7

Seahorse Metabolic Profiling of BMDMs

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BMDMs were plated into XFe96 cell culture microplates (Agilent Technologies, Santa Clara, CA, USA) one day before the assay experiment and incubated overnight at 37°C and 5% CO2. On the day of testing, BMDMs were washed with XF RPMI medium and pretreated with this medium supplemented with 1 mM sodium pyruvate, 2 mM l-glutamine, and 10 mM glucose. For the glycolytic rate assay, 5 µM Rot/AA was added to port A and 500 mM 2-DG was added to port B following the recommended 10x concentrations. For the XF Cell Mito Stress Test, 15 µM oligomycin was added to port A, 10 µM FCCP to port B, and 5 µM Rot/AA to port C following the recommended 10x concentrations. The XF Cell Mito Stress Test Kit (Agilent Technologies) and the XF Glycolytic Rate Assay Kit (Agilent Technologies), were used for the seahorse metabolic assay.
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8

Measuring Glycolysis in Esophageal Cancer

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A Seahorse Extracellular Flux (XF96e) Analyzer and the Agilent Seahorse XF Glycolytic Rate Assay Kit were used to measure the extracellular acidification rate (ECAR), reflecting the glycolytic level of live esophageal cancer cells. The specific experimental procedures were performed according to the manufacturer’s instructions.
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9

Metabolic Profiling of SH-SY5Y Cells Treated with P. gingivalis LPS

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SH-SY5Y cells were seeded at a density of 5 × 104 cells/well in XFe96 Well plates (Seahorse Bioscience, Billerica, MA, USA). The cells were treated with a 10.0 μg/mL concentration of P. gingivalis-LPS for 24 h. After treatment, cells were subjected to extracellular flux analysis using the XF Cell Mito Stress Test Kit (Agilent, Santa Clara, CA, USA; 103015-100), XF Glycolytic Rate Assay Kit (Agilent, Santa Clara, CA, USA; 103344-100), and XF Real-Time ATP Rate Assay (Agilent, Santa Clara, CA, USA; 103592-100) respectively.
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10

Mitochondrial and Glycolytic Profiling

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The Seahorse assays were performed with Agilent Seahorse XF Cell Mito Stress Kit (#103010-100) and Agilent Seahorse XF Glycolytic Rate Assay Kit (#103346-100) according to their user guides. Approximately 2 × 105 cells were plated in each well of the microplate before the glycolytic rate and mitochondrial stress tests. The drugs were injected into each sample at different times. The Extra Cellular Acidification Rate (ECAR) was measured in the glycolytic rate and the Oxygen Consumption Rate (OCR) was tested to indicate oxidative phosphorylation.
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