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5 protocols using halt phosphatase inhibitor mixture

1

Western Blot Analysis of ECM-Detached Cell Lysates

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ECM-detached cells were harvested, washed once with cold PBS, and lysed in 1% Nonidet P-40 supplemented with protease inhibitors leupeptin (5 µg/mL), aprotinin (1 µg/mL), and PMSF (1 mM) and the Halt Phosphatase Inhibitor Mixture (Thermo Scientific, Waltham, MA, USA). Lysates were collected after spinning for 30 min at 4 °C at 14,000 rpm and normalized by BCA Assay (Pierce Biotechnology, Waltham, MA, USA). Normalized lysates underwent SDS-PAGE and transfer/blotting was performed as previously described16 (link). Membranes were cut prior to incubation with primary antibodies when blotting for more than one target at a time. The following antibodies were used for western blotting: FLIP (Cell Signaling Technology, #56343), phospho-Akt (Ser473) (Cell Signaling Technology, #4060), GAPDH (Cell Signaling Technologies, #5174), β-tubulin (Cell Signaling Technology, #2146), β-Actin (Sigma-Aldrich, #A1978), phospho-IκBα (Ser32/36) (Cell Signaling Technology, 9246s), phospho-GSK-3β (Ser9) (Cell Signaling Technology, 5558s), and c-myc (sigma M-5546). Original, unprocessed data are available in Supplemental Figs. 5, 6.
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2

Cell Protein Extraction and Western Blot

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Attached and ECM-detached cells were washed once with ice-cold PBS and lysed in RIPA buffer (50 mM Tris (pH 8.0), 150 mM NaCl, 1% Nonidet P-40, 0.5% Sodium deoxycholate, 0.1% SDS) supplemented with 1 mg mL−1 aprotinin, 5 mg mL−1 leupeptin, 20 mg mL−1 phenylmethylsulfonyl fluoride (PMSF) and HALT phosphatase inhibitor mixture (Thermo Fisher Scientific). Lysates were collected after centrifugation for 15 min at 4°C at 14,000 r.p.m. and normalized by BCA assay (Pierce Biotechnology). Normalized lysates underwent SDS-PAGE and transfer/blotting were carried out as described previously.63 (link) The following primary antibodies were used for western blotting: β-actin (Sigma-Aldrich; A1978) (1:10000), Vinculin (Proteintech; 66305-1-Ig) (1:3000), mouse Irg1/Acod1 (Cell Signaling Technology (CST); 17805) (1:1000), human IRG1/ACOD1 (CST; 77510) (1:1000), Tim23 (BD Biosciences; 611222 (1:2000), Tom20 (CST; 42406) (1:1000), Sdhb (Proteintech; 10620-1-AP) (1:10000). Secondary antibodies used were Alexa Fluor Plus 680 and 800 (Thermo Fisher Scientific; A32788, A32808) (1:10000) against mouse and rabbit, respectively, and bands were visualized with the LiCor Odyssey CLx (Licor).
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3

Spleen Protein Expression Analysis

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Spleens were harvested from all experimental groups, homogenized, and made up the cell lysate. Whole cell lysate was prepared by using lysis buffer (50 mM Tris-HCl [pH 7.4], 5 mM EDTA, 120 mM NaCl, 0.5% Nonidet P-40, 0.5 mM NaF, 1 mM dithiothreitol, 0.5 mM phenylmethylsulfonyl fluoride) along with HALT phosphatase inhibitor mixture (78420, Thermo Fisher Scientific) and protease inhibitor mixture (78410, Thermo Fisher Scientific) for 1 hour. Samples were electrophoresed on a 10% SDS-polyacrylamide gel and electroblotted onto polyvinylidene difluoride membranes. Blots were blocked for 1 hour in 5% BSA in PBS with 0.1% Tween 20. NF-κB, pNF-κB, FOXO1, and pFOXO1 proteins were detected with NF-κB (8242S), pNF-κB (3033S), FOXO1 (2880S), and pFOXO1 (9461S) monoclonal antibodies, respectively, at a dilution of 1:250 and as recommended by the manufacturer (Cell Signaling Technology). Goat anti–rabbit IgG G-conjugated horseradish peroxidase (sc-2004) (diluted 1:5000) was used as a secondary antibody (Santa Cruz Biotechnology Inc.). Immunoblotting for β-actin was carried out to confirm equal loading.
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4

Phosphatase Inhibition in Co-IP

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Protein lysates were incubated with λ-phosphatase (New England Biolabs) with or without the recommended amount of the Halt Phosphatase Inhibitor Mixture (Thermo Fisher Scientific) for 30 min at 30 °C. Samples were washed six times with buffer, according to the manufacturer’s protocol, prior to co-IP and subsequent SDS-PAGE analysis.
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5

Immunoblotting with Phosphatase Inhibitors

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Nonidet P-40 supplemented with protease inhibitors leupeptin (5µg/mL), aprotinin (1µg/mL), and PMSF (1mM) and the Halt Phosphatase Inhibitor Mixture (Thermo Scientific, Waltham, MA, USA). Lysates were collected after spinning for 30 minutes at 4°C at 14,000 rpm and normalized by BCA Assay (Pierce Biotechnology, Waltham, MA, USA). Normalized lysates underwent SDS-PAGE and transfer/blotting was performed as previously described (Davison et al., 2013). The following antibodies were used for western blotting: FLIP (Cell Signaling Technology, #56343), phospho-Akt (Ser473) (Cell Signaling Technology, #4060), GAPDH (Cell Signaling Technologies, #5174), β-tubulin (Cell Signaling Technology, #2146), β-Actin (Sigma-Aldrich, #A1978), phospho-IκBα (Ser32/36) (Cell Signaling Technology, 9246s), phospho-GSK-3β (Ser9) (Cell Signaling Technology, 5558s), and c-myc (sigma M-5546).
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