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6 protocols using accutase solution

1

Human iPSC Maintenance Protocol

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Human iPS cell lines (201B7 and 1231A3) were obtained from the Center for iPS Cell Research and Application (Kyoto University). Human iPSCs were maintained on LM511-E8 (iMatrix-511; Nippi; 0.25 μg/cm2) in an uncoated manner, along with StemFit medium (Ajinomoto), in a humidified atmosphere of 5% CO2 and 95% air at 37 °C. At passage, the cells were dispersed in Accutase solution (BD Biosciences) for 5 min at 37 °C. Human iPSCs were seeded in a culture medium containing 10 μM Y-27632.
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2

Evaluating Nintedanib's Effects on Cell Viability and Proliferation

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For assay of cell viability, B16-F10, H1703, A549 and NIH-3T3 cells were plated in 96-well round-bottomed plates at a density of 2 × 103/well and incubated for 72 h with various concentrations of nintedanib. Cell viability was then assessed with the use of a CellTiter-Glo 3D Luminescent Cell Viability Assay (Promega). For assay of cell proliferation, B16-F10 or NIH-3T3 cells were seeded in 10-cm dishes and exposed to 0.5 or 1 μM nintedanib for 24, 48 or 72 h. The cells were then washed three times with ice-cold PBS, collected with the use of Accutase solution (BD Biosciences), and stained with the use of a Zombie Fixable Viability Kit (BioLegend) for discrimination of live from dead cells. The living cells were counted with a flow cytometer (LSRFortessa X-20, BD Biosciences) and normalised by those in untreated cultures.
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3

Cellular Uptake and Mitochondrial Effects

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A-375 cells were seeded in 12-well plates using 100,000 cells per well and left to adhere for 24 h. Cells were treated with 50 nM salt 1-3C or salt 1-8C for 30, 60, 90, and 120 min. Cells were harvested with accutase solution (Sigma-Aldrich), washed twice with phosphate buffered saline (PBS), and resuspended in PBS. Uptake of both compounds was measured by the fluorescent properties of the compounds detected in the channels for APC (allophycocyanin) (Ex-Max 650 nm/Em-Max 660 nm). The fluorescent signals were evaluated by BD FACSVerse™ (BD Biosciences, Franklin Lakes, NJ, USA) using Cell Quest software (BD Biosciences). All samples were analyzed in triplicate.
Mitochondrial membrane potential was analyzed using JC-1 dye (Thermo Fisher Scientific, Waltham, MA, USA). A-375 cells at a concentration of 250,000 cells per well were cultured overnight in 6-well plates. Cells were treated with 2000 nM salt 1-3C and 5000 nM salt 1-8C for 15 min, 2 h, 4 h, and 24 h or were untreated (time 0). Cells were harvested with accutase solution, washed twice with PBS, resuspended in PBS with 5 µg/ml JC-1, and measured by FACSAriaTM (BD Biosciences). Data were analyzed in triplicate by FCS Express version 4.0 (De Novo Software, Glendale, CA, USA).
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4

Macrophage Phenotype Modulation by Tumor Cell Secretome

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U937 cells differentiated into macrophages and activated with LPS (M1 macrophages) were treated or not with the supernatant of HeLa, SiHa, C-33A, and HaCaT cells at a final concentration of 30% of the total volume. Then, the cells were incubated for 7 days in a humidified atmosphere containing 95% air and 5% CO2. Next, the supernatants of these cultures were collected and stored at –80°C until cytokine profile analysis and nitric oxide (NO) assessment. Following this, the cells were detached with accutase solution (BD Biosciences, San Jose, CA, USA) and stained for assessment of CD163 and TLR by flow cytometry (FC) analysis. Dexamethasone (DEX) at a final concentration of 200 ng/mL was used as positive control for induction of M2 macrophages [20 (link)]. The supernatant from the nontumorigenic cell line HaCaT was used as negative control.
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5

Sialic Acid Modulation in Skeletal Myocytes

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Cells were detached with Accutase solution (561527, BD Bio-sciences) for hPSCs or with TrypLE (12604, Gibco) for myocytes, followed by 3 times DPBS wash and then analyzed through FACS Calibur I (BD Bioscience). For the determination of sialic acid, cells were stained with Fluorescein SNA (FL-1301, Vector Laboratories).
CellQuest Pro soft-ware was used for FACS analysis. hESCs were differentiated to skeletal muscle cells by using commercially available skeletal muscle differentiation medium kit (Amsbio). In brief, Cells were seeded onto a collagen I (Sigma)-coated dish at 5,000 cells /cm2 dish and maintained for 6 days in skeletal muscle induction medium (SKM01, Amsbio). At day 6, cells were dissociated with 0.05% trypsin, seeded onto a collagen I-coated dish at 5,000 cells /cm2 dish, and maintained for 6 days in myoblast cell culture medium (SKM02, Amsbio). At day 12, when myoblasts are confluent, the medium was changed to myotube cell culture medium (SKM03, Amsbio) and freshly changed every 3 days for more than 6 days. For drug response test, cells were treated with ManNAc (Sigma) at the indicated times and concentrations and the media with ManNAc was changed every day.
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6

Clofazimine-Induced Apoptosis and Cell Cycle Modulation

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Indicated cell lines were seeded at 500'000 per well in 6-well plates and incubated for 24h in presence of 20µM clofazimine or DMSO. The cells were detached using the Accutase solution (BD) and stained for the corresponding assays. Apoptosis levels were measured using the Annexin V/PI staining kit (Sigma-Aldrich) according to the manufacturer's instructions. For cell cycle analysis, the cells were fixed in 70% EtOH and stained with propidium iodide prior to analysis. For both assays, measurements were performed with the BD Galleos flow cytometer and the results were analyzed using the Flowing Software 2.5 (Turku University).
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