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Rabbit anti ha

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Rabbit anti-HA is a primary antibody that binds to the Hemagglutinin (HA) tag. HA is a commonly used protein tag that can be fused to target proteins to facilitate their detection and purification. The rabbit anti-HA antibody can be used in various immunological techniques, such as Western blotting, immunoprecipitation, and immunocytochemistry, to specifically detect and analyze HA-tagged proteins.

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11 protocols using rabbit anti ha

1

Immunogold Labeling of PRRT2 in COS7 Cells

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COS7 cells were transiently transfected with DNA encoding either HA-PRRT2 or PRRT2-HA. Pre-embedding immunogold labeling was performed 48 h after transfection. Cells were fixed in 4% paraformaldehyde in 0.1 m PBS (pH 7.4), permeabilized and incubated with rabbit anti-HA (1:100, Bethyl Laboratories). Samples were then incubated with a secondary antibody (goat anti-rabbit, 1:100, Nanoprobes) conjugated to a colloidal nanogold particle (10 nm). Cells were then fixed for 1 h in 1.2% glutaraldehyde in PBS, post-fixed in 1% osmium tetroxide in 0.1 m sodium cacodylate (pH 7.4), en block stained in 0.5% uranyl acetate, dehydrated in a graded series of ethanol, and finally embedded in Epon resin. Ultrathin (60- to 70-nm-thick) sections, obtained with a Leica EM UC6 ultramicrotome, were collected on 200 mesh copper grids. The grids were observed in a Jeol JEM 1011 electron microscope operating at 100 kV and recorded with a 4-megapixel Gatan Orius SC100 charge-coupled device camera. To test for specificity of the immunocytochemical procedures, the HA antibody was omitted, or, alternatively, cells were transfected with an empty vector. Under either condition, no immunoreactivity was observed.
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2

Immunoblotting of Transfected Murine Cells

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12 well plates of transfected murine 8B9 cells were lysed in 0.5X IGEPAL lysis buffer as described previously [27 (link)]. All lysates were resolved by SDS-PAGE electrophoresis and transferred to PVDF membranes. Antibodies: rabbit anti-HA (Bethyl Laboratories, Inc.), mouse anti-HA (MAb clone 12CA5), rabbit anti-FLAG M2 (Sigma), mouse anti-p53 (MAb clone Ab-8, ThermoFisher Scientific), mouse anti-FLAG epitope (clone M2, Sigma) and anti-16E6 MAb 6G6 (a generous gift from Arbor Vita Corporation). Detection of blot signals was captured and analyzed using a Syngene G:Box (Syngene USA, Frederick, Maryland).
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3

Hoechst Squash and Immunofluorescence Staining

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For live phase/Hoechst squash, dissected testes were cut open on a slide in 70 μl of PBS containing 2μg/ml Hoechst 33342, gently squashed by lowering a coverslip and wicking out some solution, and examined immediately on a Zeiss Axioplan microscope. Images were taken with a Photometrics COOLSNAP EZ camera and processed with Adobe Photoshop software.
Immunofluorescence was performed as previously described [15 (link)], using the following antibodies: mouse anti-GFP (Roche), rabbit anti-HA (Bethyl Laboratories), mouse anti-V5 (Invitrogen), mouse anti-MYC (Millipore), anti-Aly [22 (link)], anti-Topi [20 (link)], mouse anti-Fibrillarin (Cytoskeleton), rabbit anti-Fibrillarin (Abcam) and anti-Med26 [37 (link)]. Alex-fluor-conjugated goat secondary antibodies were used. Images were captured with either a Leica SP2 confocal microscope or a Leica SP5 confocol microscope and processed with Adobe Photoshop software.
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4

Immunoblotting Analysis of Protein Phosphorylation

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The transductants (1 × 106) were washed with PBS, lysed with 100 μl of lysis buffer (20 mM HEPES (pH 7.5), 150 mM NaCl, 10% glycerol, 1% Triton X-100, 1.5 mM MgCl2, 1 mM EGTA, 10 μg/ml aprotinin, 10 μg/ml leupeptin) and incubated on ice for 10 min. After centrifugation at 21,500 g at 4°C for 10 min, the supernatant was mixed with Laemmli's sample buffer and boiled. The lysate was resolved by sodium dodecyl sulphate polyacrylamide gel electrophoresis and transferred to a nitrocellulose membrane (GE Healthcare, Buckinghamshire, UK). After the membrane was blocked either with 5% skim milk (Wako Pure Chemical Industries, Osaka, Japan) for the detection of the HA tag, V5 tag and β-tubulin or with 3% bovine serum albumin (Sigma) for the detection of p-c-kit Y721. The blot was probed with rabbit primary antibodies, followed by horseradish peroxidase (HRP)-conjugated anti-rabbit IgG (Biosource, Camarillo, CA, USA). The primary antibodies used are: rabbit p-c-kit Y721 (which corresponds to Y719 of mouse origin) (Cell Signaling Technology, Danvers, MA, USA), rabbit anti-HA (BETHYL, Montgomery, TX, USA), rabbit anti-V5 (Millipore, Billerica, MA, USA) and rabbit anti-β-tubulin (Santa Cruz Biotechnology, Santa Cruz, CA, USA). Detection was performed using Luminata Western HRP Substrates (Millipore).
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5

Comprehensive Antibody Characterization Protocol

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The following antibodies were used: mouse anti-paxillin (BD Biosciences, San Jose, CA), rabbit anti-Cas, rabbit anti-FAK, rabbit anti-GAPDH and mouse anti-tubulin (Santa Cruz Biotechnology, Inc., Santa Cruz, CA), mouse anti-vinculin (Sigma-Aldrich), rabbit anti-phospho-p130 Cas (pTyr165) (Cell Signaling Technology, Beverly, MA); mouse anti-T7 (EMD Millipore), rat anti-tyr-tubulin and mouse anti-clathrin (Abcam, Cambridge, MA), mouse anti-HA (HA.11) (BioLegend, Dedham, MA) and rabbit anti-HA (Bethyl, Montgomery, TX). Mouse monoclonal to mCherry was courtesy of Ben Hoffstrom (FHCRC antibody facility) and Jihong Bai-.
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6

Antibody Panel for Protein Analysis

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The following antibodies were used: mouse anti-EEA1, rabbit anti-Crk (BD Biosciences), rabbit anti-ElgB, rabbit anti-GAPDH, rabbit anti-Cul5, mouse anti-Cul5, mouse anti-IRS4, mouse anti-Myc (9E10) and mouse anti-tubulin (Santa Cruz Biotechnology, Inc.), rabbit anti-beta catenin, mouse anti-Flag (M2) (Sigma-Aldrich), mouse anti-EphA2 (8B6), rabbit anti-EphA2 (D4A2), rabbit anti-EphA2 (pY588), rabbit anti-EphA2 (pY772), rabbit anti-EEA1, rabbit anti-Ezrin (Cell Signaling Technology); mouse anti-T7 (EMD Millipore), mouse anti-HA (HA.11) (BioLegend), rabbit anti-HA (Bethyl) and goat anti-human IgG Fc (Jackson ImmunoResearch Inc.). 4G10 was made in-house from the 4G10 hybridoma.
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7

Immunoprecipitation and Co-immunoprecipitation Assay

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Sub-confluent stably over-expressed DKO MEF cells (in 100-mm plates) were lysed in IP buffer (Pierce) and an equal amount of lysates (3000 μg) was immunoprecipitated overnight with EZview red anti-Flag (25 μl/mg protein) affinity gel. For co-IP assay, HEK-293 cells were transfected with 3 μg each of HA-XIAP and p3XCMV-FLAG-Casp3 WT or Casp3-Zn mutant plasmids. At 48 hr post-transfection, cells were lysed in IP buffer and an equal amount of lysates (500 μg) was immunoprecipitated overnight with EZview red anti-Flag or EZview red anti-HA affinity gel (Sigma). Following immunoprecipitation, the beads were washed 3 times with lysis buffer, resuspended in 2X Laemmli sample buffer (Bio-Rad Lab), fractionated on SDS-12% polyacrylamide gel and analyzed by Western blot with rabbit anti-HA (Bethyl Lab, TX, USA) or with mouse M2-FLAG (Sigma) antibodies.
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8

Antibody Identification and Utilization

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For antibodies, rabbit anti-DISC1 (Millipore, ABN-425) was purchased from Millipore; rabbit anti-BMAL1 (Abcam, ab93806) from Abcam; mouse anti-alpha-tubulin (Proteintech, 66031-1-lg) from Proteintech; rabbit anti-HA (Bethyl, A190-108A) from Bethyl; rabbit anti-GFP (Invitrogen, A11122) from Invitrogen; rabbit anti-Flag (ThermoFisher, PA1-984B) from ThermoFisher; mouse anti-Flag (Sigma, F1804) from Sigma; mouse anti-c-Myc (Santa Cruz, sc-40) from Santa Cruz; GSK3β p-Y216 (Invitrogen, 44-604G) from Invitrogen; mouse anti-GSK3β (Cell Signaling, 9832S) from Cell Signaling. Antibodies were utilized as the first antibody of western blot or precipitating antibody of immunoprecipitation.
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9

Immunoprecipitation and Western Blotting Analysis

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For immunoprecipitation, cells transfected for 24 hours were lysed in IP buffer (10 mM HEPES pH 7.4, 150 mM NaCl, 1 mM EGTA, 1 mM MgCl2, 1% Triton X-100, 1 mM Na3VO4, 10 mM NaF, 25 mM β-glycerol phosphate), containing protease inhibitor cocktail (cOmplete Mini EDTA-free, Roche). After centrifugation at 16,000 g, the supernatant was incubated with anti-FLAG agarose beads (Sigma) at 4 °C for 1.5 hours. The beads were washed three times with IP buffer, boiled in the SDS-PAGE sample buffer, and subjected to SDS-PAGE and imunoblotting following standard protocols. Western analysis of embryo lysates was carried out essentially as described86 (link). Briefly, 5 embryos at stage 10.5 were homogenized in the lysis buffer (50 mM Tris-HCl pH 7.6, 50 mM NaCl, 1 mM EDTA, 1% Triton X-100, 10 mM NaF, 1 mM Na3VO4, 25 mM β-glycerol phosphate, 1 mM PMSF). After centrifugation at 16,000 g, the supernatant was boiled in the sample buffer and subjected to SDS-PAGE and immunoblotting. The following primary antibodies were used: mouse anti-GFP (B-2, Santa Cruz), mouse anti-FLAG (M2, Sigma), rabbit anti-HA (Bethyl Labs), mouse anti-Myc (9E10). Staining with anti-α-Tubulin antibody (B512, Sigma) was used as loading control. Chemiluminescence was captured by the ChemiDoc MP imager (BioRad).
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10

Whole-Mount and Sectioned Immunohistochemistry

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RNA in situ hybridization and immunohistochemistry on whole Tg(elavl3:Gal4-VP16413–470);Tg(UAS:HA-uprt-mcherry) embryos and on brain cryostat sections (16 um) were carried out according to standard protocols [39 ]. The following antibodies were used: anti-HA.11 (clone 16B12, 1:500, abcam), rabbit anti-HA (1:500, Bethyl Laboratories), anti-Elavl3 (ab78467, 1:100, abcam), anti-Elavl (formerly known as anti-HuC/D 16A11, 1:40, University of Oregon), anti-GFAP (zrf-1, 1:100, Zebrafish International Resource Center) and anti-PCNA (1:500, Dako). Primary antibodies were revealed using secondary antibodies coupled to Alexa-Fluor dyes (goat anti-rabbit, goat anti-mouse [H + L], IgG1, IgG2a; 1: 500, Life Technologies) or coupled to horse radish peroxidase (HRP, 1:200, Jackson ImmunoResearch).
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