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4 protocols using monoclonal anti flag m2 peroxidase hrp

1

Signaling Pathway Activation Analysis

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Bovine serum albumin (BSA) was obtained from Amresco. Leupeptin and aprotinin were from Roche. Phenylmethylsulfonyl fluoride, sodium vanadate, dithiothreitol (DTT), and Polybrene were from Sigma, and NAF was purchased from JT Baker. Human epidermal growth factor (EGF) was purchased from Millipore. Primary antibodies were obtained from the following companies: antiphospho-Akt (Ser473), anti-Akt, antiphospho-p130 Cas (Tyr249), antiphospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (D13.14.4E), p44/42 MAPK (Erk1/2), and antiphospho STAT3 (Tyr 705) were from Cell Signaling Technology, anti-ErbB2 (24B5), antiphospho Brk (Tyr342), antiphosphotyrosine, clone 4G10, were from Millipore, anti-p130 Cas (C-20), anti-Sam68 (c-20), anti-Stat3 (H-190), and anti-pTyr (pY99) were from Santa Cruz, anti-β-catenin was from BD Biosciences, and monoclonal ANTI-FLAG M2-peroxidase (HRP) was from Sigma. Horseradish peroxidase linked donkey anti-rabbit IgG and sheep anti-mouse antibodies were from GE Healthcare. SuperSignal West Femto Chemiluminescent Substrate and Pierce ECL Western Blotting Substrate were purchased from Thermo Scientific.
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2

Immunoblotting of Cyanobacterial Aconitase

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Proteins were usually separated by standard SDS-PAGE (12% acrylamide) using the minigel system (Bio-Rad). Proteins were denatured by 5 min boiling in Laemmli-buffer containing 70 mM SDS and 2.4 mM 2-mercaptoethanol. The separated proteins were either stained with Coomassie-brilliant blue or transferred onto PVDF membranes (Hybond, Amersham) using electro-blotting for subsequent protein detection with specific antibodies.
Soluble protein extracts (10 μg) from cells of WT, ΔacnSP, or pVZ322_AcnSP, which were cultivated at 100 μmol photons m–2 s–1 of continuous light, were used for Western-blotting. For the detection of aconitase a peptide antibody was generated. The synthetic peptide (Ac)-CELLKNPPEAKEEL-amidated specific for AcnB of Synechocystis 6803 was used to produce antiserum in rabbits (Agrisera AB, Sweden). The FLAG-tagged AcnSP protein version in strain pVZ322_AcnSP was detected with a commercial anti FLAG-tag antibody [Monoclonal ANTI-FLAG M2-Peroxidase (HRP), Sigma-Aldrich, United States].
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3

Analyzing S. aureus Protein Expression

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S. aureus cultures harbouring the respective pCN47 or pCN51 derivative plasmids were diluted 1:50 from overnight cultures and grown in TSB at 37°C and 120 rpm until sample collection. For pCN51 constructs induced with CdCl2, cultures were split at early exponential phase (OD540~0.15), 5 μM CdCl2 was added to half the cultures and incubation continued for another 2 h. S. aureus strains carrying pCN47 reporter constructs were grown to early exponential (OD540 ~0.15), mid-exponential (OD540 ~0.8) or stationary phase (OD540 ~2 after overnight culture). A sample amount corresponding to and OD540 of 0.5 in 1 ml was pelleted and stored at -20°C. The sample pellets were re-suspended in 100 μl digestion/lysis buffer (50 mM Tris-HCl, 20 mM MgCl2, 30% (w/v) raffinose) plus 1 μl of lysostaphin (12.5 μg ml-1) and incubated at 37°C for 1 h. Samples for SDS-PAGE were prepared by adding 4X NuPAGE LDS Sample Buffer (Invitrogen) and proteins denatured at 95°C for 10 min. Samples were separated by SDS-PAGE (NuPAGE 4–12% Bis-Tris Protein Gels, Invitrogen and then transferred to a PVDF transfer membrane (Thermo Scientific, 0.2 μM) following standard procedures [63 ,64 ]. FLAG-tagged proteins were detected using mouse anti-FLAG-HRP antibody (Monoclonal ANTI-FLAG M2-Peroxidase (HRP), Sigma-Aldrich) following the manufacturer’s protocol.
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4

Immunoprecipitation of HA-tagged Proteins

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For immunoprecipitation, 1 ml of the lysates prepared with IP extraction buffer from 0.5 g of leaves was incubated with anti-HA Affinity Matrix (Roche 11815016) for o/n in a rotary shaker at 4°C. The beads were collected and washed three times with 1 ml of the extraction buffer. Immunoprecipitated proteins were eluted from the beads by boiling in SDS sample buffer at 95°C and analyzed by Western blot using the corresponding antibodies. We used the following antibodies; Anti-HA-Peroxidase High Affinity (3F10) (Roche 12013819001) and Monoclonal ANTI-FLAG M2-Peroxidase (HRP) (SIGMA A8592).
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