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3 amino 9 ethylcarbazole aec

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3-amino-9-ethylcarbazole (AEC) is a chemical compound commonly used as a chromogenic substrate in various laboratory applications. It is a colorimetric reagent that produces a brown-red precipitate upon enzymatic reaction, often utilized in histochemical and immunohistochemical staining procedures.

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16 protocols using 3 amino 9 ethylcarbazole aec

1

Histological Analysis of Cardiomyocyte Apoptosis

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For histological analysis, hearts were processed according to Salameh et al. (2015 (link)). Briefly, formalin-fixed hearts were embedded in paraffin and sectioned into 2 μm slices. Thereafter, heart slices were de-waxed, re-hydrated and specific primary antibodies to AIF (1:50, Santa Cruz, Heidelberg, Germany), cC3 (1:200, Cell Signaling, Frankfurt, Germany), PAR (1:600, Bio-Rad, Munich), and NT (1:50, Merck-Millipore, Darmstadt, Germany) were applied over night at 4°C. After several washing steps, secondary antibodies labeled with HRP (horseradish peroxidase) were administered for 1 h at room temperature. Thereafter, detection of signals was completed by application of the red chromogen AEC (3-amino-9-ethylcarbazole, Dako, Hamburg, Germany) according to the manufacturer's instruction. Nuclei of cardiomyocytes were counter-stained with haemalum. Specimen were embedded in glycerol-gelatin and investigated at 400x magnification with a Zeiss Axiolab microscope (Zeiss, Jena, Germany). Evaluation of cardiomyocytes was carried out by a blinded observer. We investigated right and left ventricular specimen separately and at least 50 cells per region were counted and the ratio of positive cells was evaluated in relation to the total number of counted cells. In that manner, 100 cells per heart and 600 cells per experimental group were counted.
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2

Histological Assessment of Liver Fibrosis

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For the detection of collagen fibers, liver specimen were fixed in 10% formalin, paraffin-embedded and stained in 0.1% Sirius-red in saturated picric acid (Chroma, Münster, Germany) using standard methods as previously described [11 (link)].
For immunohistochemical (IHC) staining of α-smooth muscle actin (αSMA), slides with sections were incubated with a mouse-anti-αSMA (clone 1A4; Sigma–Aldrich, St. Louis, USA) diluted 1:100 in Tris–buffered saline overnight. A secondary biotinylated rabbit-anti-mouse antibody, absorbed with rat serum (Dako, Glostrup, Denmark), was subsequently applied (1:300, 30 min) and complexed with streptavidin-conjugated alkaline phosphatase (1:500, 30 min; Dako). Finally, slides were developed with AEC (3-amino-9-ethylcarbazole) (15 min; Dako) and counterstained with hematoxylin. The amount of staining was evaluated by computational analysis (Histoquant; 3DHistech, Budapest, Hungary). Quantification (% of stained area) of IHC staining is expressed as mean±SEM.
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3

Immunohistochemical Staining of Formalin-Fixed Tissues

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For immunohistochemical staining, formalin-fixed and paraffin embedded tissue sections were first deparaffinized and rehydrated by washing with xylene (3x for 6 min each time), 100% ethanol, 96% ethanol, 70% ethanol (each 2x for 5 min each time) and finally rinsed in distilled H2O. Antigen retrieval was performed in a pressure cooker for 15 min by covering the slides with Target Retrieval Solution (citrate buffer, pH 6.0; DAKO, Hamburg, Germany). After cooling down the slides for 30 min and washing with TBS (2x for 5 min each time), the primary antibody was applied for 1 h. Slides were washed again with TBS twice for 5 min prior to incubation with the biotinylated secondary antibody for 25 min at room temperature, followed by 2 × 5 min each time TBS washes, 10 min H2O2 block, 2 × 5 min each time TBS washes and Streptavidin-HRP (DAKO) incubation for 25 min. After 2 × 5 min each time TBS washes, peroxidase was detected by AEC (3-amino-9-ethylcarbazole, DAKO) followed by a haematoxylin stain.
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4

Murine Femoral Fracture Histology

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Murine femoral fracture sections were used for histological analysis. After standard processing, serial transverse 5-µm sections were cut and stained with hematoxylin/eosin for histological assessment. For immunohistochemistry with an antiserum against TFF3 [34 (link)], deparaffinized sections were pretreated with 0.05% trypsin for 60 min. The sections were then left to react with anti-human TFF3, serum (anti-rTFF3-1) [34 (link)] diluted 1:300, followed by incubation with biotinylated secondary antibodies (Dianova, Hamburg, Germany). Negative control sections were incubated with isotype normal mouse IgG (Santa Cruz Biotechnology). Bound antibodies were visualized by exposure to a complex of avidin and biotinylated peroxidase H (Vectastain-Elite-ABC Kit, Vector Laboratories, Burlingame, CA). The sections were developed with AEC (3-amino-9-ethylcarbazole) (DAKO, Hamburg, Germany) and counterstained with hematoxylin.
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5

Spike Protein Histochemical Assay

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Protein/spike histochemistry was performed as described previously [11 (link)] (schematically depicted in Fig 2C). TMA sections were rehydrated, treated with 1% hydrogen peroxide to remove endogenous peroxidases and goat serum to block nonspecific binding. Next, precomplexed S1/HA proteins (20–30 μg of S1 and 2–3 μg of HA per TMA) and Strep-Tactin HRP were applied to TMAs and incubated at 4°C overnight. AEC (3-amino-9-ethylcarbazole, Dako, The Netherlands) substrate was used to detect binding of proteins. To remove sialic acids, tissues were treated with Arthrobacter ureafaciens neuraminidase (Roche, USA) at a concentration of 1 mU/100 μl in PBS (pH 5.0) overnight at 37°Ci
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6

Immunohistochemical Analysis of ST3GAL1 in Melanomas

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Immunohistochemistry was performed on tissue microarrays (US Biomax, Inc.) of formalin-fixed paraffin-embedded specimens of human nevi (n = 24), malignant melanomas (n = 56), and metastatic malignant melanomas (n = 40). After antigen retrieval (with citrate buffer pH 6.0), staining was performed with the UltraVision Detection System kit (Lab Vision, Fremont, CA, USA) following manufacturer’s instructions. Sections were incubated overnight at 4 °C with rabbit anti-ST3GAL1 antibody (1:50 dilution; #PA5-21721, Invitrogen). AEC (3-amino-9-ethylcarbazole; Dako, Copenhagen, Denmark) was used as chromogen. Sections were counterstained with hematoxylin. Each stained core section was scored by visual microscopy inspection as follows: 0, for no staining (negative); 1, for weak staining (low); 2, for moderate staining (medium); and 3, for marked staining (high). Most of the cores showed expression in >75% of the tumor cells. Immunohistochemistry in formalin-fixed paraffin-embedded murine lung sections was performed as reported above, using anti-GFP antibody (1:500 dilution; Santa Cruz Biotechnology).
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7

Immunohistochemical Analysis of Tumor Samples

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Tumor specimens were fixed in 10% formalin overnight and embedded in paraffin. For immunohistochemistry, slides were deparaffinized and rehydrated. Antigen retrieval was enhanced by boiling in a steam pot at pH 6 in Dako target retrieval solution (Dako) for 15 min, followed by cooling for 30 min and washing in distilled water. Nonspecific binding was blocked by using the Linaris avidin/biotin blocking kit (Vector Laboratories) according to the manufacturer’s instructions. Slides were incubated with primary antibodies for 30 min, rinsed in PBS-T (PBS with 0.5% Tween 20), incubated for 20 min with the appropriate secondary antibody using the Dako REAL detection system (Dako), and rinsed in PBS-T. After blocking of endogenous peroxidase and incubation with streptavidin-horseradish peroxidase (HRP) (20 min at room temperature), slides were developed with 3-amino-9-ethylcarbazole (AEC) (Dako) and counterstained with hematoxylin. All antibodies were diluted in Dako antibody diluent, including anti-SMAD4 (dilution 1:50; Santa Cruz), Ki67 (dilution 1:1,000, Sigma), and CK19 (dilution 1:200, Abcam).
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8

Immunohistochemical Analysis of HSP70 Expression

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Immunohistochemical investigation was performed on specimens fixed in formalin and embedded in paraffin. Four micrometer-thick sections were cut, dewaxed, and hydrated, heated in a microwave oven (three to four cycles of 5 min each) in 10 mM citrate buffer (pH 6.0), then washed twice with PBS for 5 min. All sections were incubated in 3% hydrogen peroxide (v/v) in methanol for 5 min. Immunohistochemistry was performed with the Streptavidin–biotin complex (StreptABC) using rabbit polyclonal antibody against HSP70 (Santa Cruz Biotechnology, Inc., Heidelberg, Germany) at a dilution of 1:200 for 2 h at 37°C. Sections were then incubated for 30 min at RT with biotinylated anti-rabbit immunoglobulin diluted in PBS, with StreptABC for 30 min at RT, and the color was developed with 3-amino-9-ethyl-carbazole (AEC) (Dako, Copenhagen, Denmark) for 5–10 min at RT, and counterstained with Mayer hematoxylin for 3 min. Results were assessed semiquantitatively in blind by three expert pathologists and by counting the proportion of positively stained cells in 10 random high power fields at a 10 and 40× magnification.
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9

Immunohistochemical Analysis of YB-1 in Tumor Tissues

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Formalin-fixed paraffin sections (2.5 µm) of tumor tissues were deparaffinized with xylene and rehydrated in graded alcohols. Immunohistochemical staining was done with the Dako Envision system, which uses dextran polymers conjugated with horseradish peroxidase (Dako, Carpinteria, CA, USA). For antigen retrieval, the slides in a target retrieval solution (pH 6.0; DAKO) were boiled for 10 min in a microwave oven. Tissue sections were incubated in a humidified box at 4 °C overnight with a primary antibody (Ab) against YB-1 (1:100 dilutions, Novus USA). After incubation, the sections were treated with an Envision+System-HRP secondary Ab (DaKo). Color development was conducted using 3-amino-9-ethylcarbazole (AEC) (DAKO) as a chromogen. Finally, all sections were counterstained with hematoxylin (DaKo). Negative control sections were treated in the same manner except if they were incubated with Tris-buffered saline without primary Ab.
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10

Immunohistochemistry for HIF-2α and CD55

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Clinical samples from the biobank of the Institute of Pathology of the University Hospital of Basel were used for the TMA construction as described in Supplementary Material and methods. Expression of HIF-2α and CD55 was analyzed by immunohistochemistry on 5-mm formalin-fixed paraffin-embedded sections of NB by using an antibody to HIF-2-α (Abcam ab8365, Cambridge, UK,) and to CD55 (HPA024386 Sigma-Aldrich). Antigen was retrieved by pretreating dewaxed sections in a microwave oven at 750 W for 5 min in citrate buffer (pH 6) and processing them with a Super Sensitive Link-Labeled Detection System (Biogenex, Florence, Italy). The enzymatic activity was developed using 3-amino-9-ethylcarbazole (AEC, Dako, Gostrup, Denmark) as achromogenic substrate. Following counterstaining with Mayer's haematoxylin, slides were mounted in aqueous mounting medium (glycergel, Dako, Gostrup, Denmark).
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