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10 protocols using 70 m strainer

1

Multicolor Flow Cytometry Analysis of Murine T Cells

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The thymus and spleen were dissected and smashed through a 70-µm strainer (Thermo Fisher Scientific, Waltham, MA, USA). Mouse peripheral blood was obtained by a retro-orbital puncture. RBC lysis buffer (Qiagen) was used to lyse the red blood cells, and the cells were suspended in FACS buffer (PBS containing 0.1% BSA). Organoid-derived T cells were harvested by adding hyaluronidase (300 μg/mL, Sigma-Aldrich, St. Louis, MO, USA) to each well and were placed at 37 °C with a 5% CO2 incubator for hydrogel degradation overnight. The distribution of T cell subsets in the thymus or organoid was studied with four-color staining performed on freshly isolated thymocytes using the following antibodies: CD3 FITC (553061), CD4 APC (553051), CD8 PE (553032), and TCRβ Percp cy5.5 (H57-597) (all from BD Pharmingen, San Diego, CA, USA). T lymphocytes in the spleen and peripheral blood samples were analyzed using the following antibodies: CD3 APC (553066), CD4 FITC (553650), CD8 BV650 (563234), CD44 PE (553134) (all from BD Pharmingen), and CD62L Percp cy5.5 (104432) (Biolegend). All flow cytometry data were collected on a flow cytometer (CytoFLEX Beckman, CA, USA) and analyzed using FlowJo 10.5 software.
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2

Mouse Lung Tissue Single-Cell Isolation

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Mouse lung tissues were collected at experimental end point, digested with 1 mg/ml collagenase A (Roche) and 30 µg/ml DNase I (Sigma-Aldrich) in complete RPMI-1640 media for 30 min at 37°C, and mechanically minced. Digested tissues were then passed through a 70-µm strainer (Thermo Fisher Scientific) to single-cell suspension and treated with ACK Lysing Buffer (Thermo Fisher Scientific) to remove red blood cells. Cells were resuspended in Live/Dead Fixable Aqua (Thermo Fisher Scientific) for 20 min at 4°C. Following a wash, cells were blocked with anti-mouse CD16/32 antibodies (BioXCell) for 30 min at 4°C. Cocktails of staining antibodies were added directly to this mixture for 30 min at 4°C. Prior to analysis, mouse cells were washed and resuspended in 100 µl 4% PFA for 30–45 min at 4°C. Following this incubation, cells were washed and prepared for analysis on an Attune NXT (Thermo Fisher Scientific). Data were analyzed using FlowJo software version 10.6 software (Tree Star). The specific sets of markers used to identify each subset of cells are summarized in Fig. S5.
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3

Lung Cell Isolation and Characterization

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Lungs were perfused with 5mL PBS via right ventricular puncture, extracted and maintained on ice in PBS with 0.7 mg/mL Collagenase A (Roche, Cambridge MA), 30 μg/mL DNase I (Sigma-Aldrich) and 2% FBS. Lung tissue was dissociated into a single cell suspension using a gentleMACS dissociator (Miltenyi Biotec, Somerville, MA) according to the manufacturer’s instructions. Lung cells were filtered through a 70 µm strainer (Thermo Fisher Scientific) and counted in Trypan Blue (Sigma-Aldrich) via hemocytometer (eFluor 506, Thermo Fisher Scientific). Cells were stained with viability dye (eFluor 506, Thermo Fisher Scientific), fixed and permeabilized using the FoxP3 kit (eBioscience San Diego, CA) according to the manufacturer’s instructions prior to staining for flow cytometry. In some cases, cells were stimulated in a commercial cocktail of phorbol 12-myristate 13-acetate, ionomycin, brefeldin A and monensin (Tonbo Biosciences, San Diego CA) for 4 hours prior to viability dye, fixing, permeabilization, and staining.
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4

CD8+ T Cell Activation Assay

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Spleens were harvested from mice treated with different viruses and were mashed through a 70 µm strainer (Thermo Fisher Scientific). Red blood cells were lysed using ACK Lysis Buffer (Life Technology), and the cells were then resuspended in RPMI medium. CD8+ T cells were then purified using CD8a (Ly-2) MicroBeads (Miltenyi Biotechnology). Enzyme-linked ImmunoSpot (ELISPOT) assay was performed to measure IFN-γ+ CD8+ T cells, according to the manufacturer’s protocol (BD Bioscience). CD8+ T cells were mixed (1:1) with irradiated B16-F10 cells (250,000 cells each), in RPMI medium, and the ELISPOT plate was then incubated at 37°C for 16 hours before staining.
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5

Activation of Murine Lymphocytes by RSV Antigen

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Cell suspensions from murine brachial lymph nodes and spleens were generated by mashing through a 70 µM strainer (Thermo Fisher). In spleen suspensions, erythrocytes were lysed by 2 min of incubation in ammonium chloride-based lysis buffer (BD Biosciences). Cells were then counted and plated (1–2) × 106 per well in a flat-bottom 96-well microtiter plate. Cells were incubated with or without recombinant RSV pre-F antigen (1 μg/mL) in 200 μL RPMI 1640 + 10% (v/v) heat-inactivated fetal calf serum (Hyclone), 5 × 10−6 M β-mercaptoethanol, 1% (v/v) penicillin-streptomycin, 1% (v/v) sodium pyruvate, 1 mM L-glutamine, 100x dilution of non-essential amino acids and 10 mM HEPES (all from Life Sciences). Cells were either incubated for 72 h for measurement of secreted cytokines, or for 24 h in the presence of 0.1% (v/v) BD GolgiPlug (BD Biosciences) for flow cytometry.
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6

Multiparametric Flow Cytometry Analysis

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After sacrifice, spleen and lung samples were mashed through 70 µm strainer (22363548, Fischer scientific) to a new well. The strainer was washed with MAC buffer (2mM EDTA, 0,5% BSA, 1 x PBS). Isolated cells were incubated for 5 min RT with red blood lysis buffer (420301, Biolegend). The reaction was stopped with 1 x PBS. 1 x 106 cells were spined down (5 min, 500 x G) and resuspend in 2% BSA, 1 x PBS, 2 µL TruStain FcX (101320, Biolegend). Total cellular fraction isolated from lungs were analyzed from the presence of lymphocytes. Specifically, the isolated cells were incubated with anti-CD8 and anti-CD19 antibodies according to manufacturer’s recommendations (Table S2). Isolated spleen cells were incubated with conjugated CD19/CD3 antibodies (Table S2) for 1 h at 4°C in dark. Blood was drawn with intracardiac punctures into anti-coagulated K2E tubes (BD Microtainer, 1307939). Whole blood was stained with conjugated anti-CD19 antibody for 1 h at 4°C in dark (Table S2). All samples were washed with cell staining buffer (BioLegend, 420201) and centrifugated for 5 min at 500 g. Cell pellet was resuspended in 500 µL of cell staining buffer. The presence of CD19-positive cells was analyzed using flow cytometry (BD LSRFortessa, BD Biosciences). The data was analyzed with Flowing Software 2.5.1 (Turku, Finland).
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7

Isolation and Phenotyping of Peritoneal T and NK Cells

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Briefly, peritoneal fluid was collected in cold FACS and processed into single cell suspension by using RBC lysis buffer (Sigma-Aldrich, USA) for about 60 seconds and then washed with cold FACS. Then all samples were filtered with 70µm strainer (ThermoFisher, USA), centrifuged at 4°C, 1000 RPM for 10 minutes and then the cell pellets were resuspended in cold FACS. To determine the T cell and natural killer (NK) subset, isolated cells were stained with anti-CD3-APC and NK1.1-BB515 antibodies (Biolegend, USA), respectively. Finally, the stained samples were analyzed by using BD-FACS Celesta flow cytometry system (BD, USA) and acquired data were visualized by using built-in Diva software (BD, USA) as described before (41 (link)).
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8

Isolation of Mouse PDX Tumor Cells

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PDX-bearing mice were euthanized, and tumors harvested. Tumors were minced and incubated in collagenase (225 U/mL; BioShop Canada Inc., Burlington, ON, Canada) in HBSS, Thermo Fisher Scientific, Mississauga, ON, Canada) at 37 °C on an end-over-end shaker. After 2 h, cell suspension was passed through a 70 µm strainer (Fisher Scientific) and centrifuged for 5 min at 500× g. Cells were resuspended in red blood cell lysis buffer (150 mM NH4Cl, 10 mM KHCO3, 0.1 mM Na2EDTA). After 5 min, cells were centrifuged, resuspended in PBS, and passed through a 70 µm strainer. Cells were centrifuged, resuspended in Aldefluor buffer (Stem Cell Technologies, Inc., Vancouver, BC, Canada), and passed through a 70 µm strainer. Approximately 1 × 107 cells were incubated with anti-H-2Kd (1:1000 SF1-1.1, BioLegend, San Diego, CA, USA) at 37 °C with shaking. After 1 h, cells were centrifuged and resuspended in Aldefluor buffer with 7-AAD (1:10, Biolegend). Stained cells were gated on SSC and FSC to eliminate doublets. 7-AAD- H-2Kd- cells were sorted into ice-cold PBS with 5% BSA (Sigma-Aldrich). H-2Kd purity was assessed (FACS Aria, BD Bioscience, San Jose, CA, USA).
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9

Magnetic-Bead Enrichment of CD19+ Cells

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CD19 magnetic‐bead‐selection and enrichment of cells of interest was performed with the RoboSep‐S instrument (STEMCELL Technologies, Vancouver, Canada) according to the manufacturer's protocol. Briefly, the sample was diluted 5‐fold using RoboSep dilution buffer (STEMCELL Technologies, Vancouver, Canada), mixed gently, and spun at 300 g for 10 minutes, followed by the aspiration of the supernatant. The sample was then diluted to the original volume with RoboSep buffer and mixed well. If required, the sample was filtered through a pre‐wetted 70 µm strainer (Fisher Scientific, Waltham, MA) to remove bone fragments and cell aggregates or debris. The sample was diluted 1:1 in EasySep RBC buffer (STEMCELL Technologies, Vancouver, Canada), transferred to a 14 ml centrifuge tube, and processed on the RoboSep‐S instrument using the RoboSep HLA Chim WB CD19 Positive Selection Kit (STEMCELL Technologies, Vancouver, Canada). In‐house magnetic‐bead selection achieved CD19+ cell purities within the stated range of the manufacturer (94.3%–99.6%).
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10

Adoptive Transfer EAE in Mice

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Mice were immunized s.c. with 100 µg of the MOG35–55 peptide (MEVGWYRSP-FSRVVHLYRNGK; Biosynthesis) in CFA (Difco) at four sites over the flanks. For active immunization, mice were also administered 300 ng inactivated Bordetella pertussis toxin i.p. on days 0 and 2. For adoptive transfer EAE, inguinal, axial, and brachial dLNs were harvested from donor mice 10–14 days post-immunization, pooled, homogenized, and passed through a 70 µm strainer (Fisher Scientific). Cells were cultured under Th17-polarizing conditions: MOG35–55 [50 µg/ml], rmIL-23 [8 ng/ml], rmIL-1α [10 ng/ml], and α-IFNγ [10 µg/ml]. Following 96 hours of culture, CD4+ T cells were purified by positive selection using L3T4 magnetic microbeads (Miltenyi Biotec). 3–6×106 CD4+ T cells were injected i.p. to naïve recipients. The recipient mice were observed daily for signs of EAE, and rated for degree of disability using a 5 point scale, as previously described (3 (link)).
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