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Fluorescent labelling system

Manufactured by Illumina

The Fluorescent labelling system is a lab equipment designed for the detection and analysis of biological molecules. It utilizes fluorescent dyes to label and visualize specific targets within a sample. The system provides a versatile platform for various applications, including genomic analysis, protein studies, and cellular imaging.

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2 protocols using fluorescent labelling system

1

Trophectoderm Cell Chromosome Analysis

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TE cells were washed separately in four drops of 10µl of PBS/PVA solution
and were transferred to a PCR tube with a drop of 0.1µl of PBS solution.
The PCR tubes with the samples were stored at -80°C until they were processed.
The trophectoderm cells were processed for DNA amplification and aCGH analysis
using 24 sure kit and Fluorescent labelling system
(Illumina®), according to the manufacturer's protocols.
Hybridization results were processed and analyzed with the BlueFuse software
(Illumina®). The embryos were further classified according
to their chromosomal constitution. According to aCGH results, the embryos were
classified into diploid (D) or mosaic (M), and further gender identified as f
(female) or m (male). According to this classification, Df and Dm were those
embryos showing diploid female or diploid male homogeneous chromosomal
complements, respectively. Mf and Mm corresponded to mosaic embryos with diploid
female or male cell lines, respectively.
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2

Whole-Genome Amplification and Analysis of Embryonic DNA

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Samples were lysed and the DNA released was fragmented and subjected to whole-genome amplification with the Repli-g® single cell kit (Qiagen, Hilden, Germany) according to the manufacturer's instructions. Two reference DNA samples (genomic male and female DNA) and one negative control followed the same amplification protocol as the embryo samples. Electrophoresis was performed to confirm that all samples and the positive controls amplified appropriately. The negative control did not produce any amplified DNA, indicating that there was no contamination. Amplified embryo DNA samples and references were labelled with Cy3 and Cy5 using the Illumina fluorescent labelling system, according to the manufacturer's instructions. Labelled samples and reference DNA were combined and applied to a 24Sure microarray (Illumina, USA) and co-hybridized overnight. After hybridization the slides were washed as described by Jaroudi and Wells (2013) , dried by centrifugation and scanned with a microarray scanner (InnoScan 710AL, Innopsys, Carbonne, France). Scanned images were analysed and quantified, and whole chromosomal copy number ratios were reported using the CytoChip algorithm fixed settings in BlueFuse Multi Software, version 3.3 (Illumina).
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