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9 protocols using pe positive selection kit

1

Antigen-Presenting Cell Cytokine Assay

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APCs expressing desired HLA, encoded peptides, and surface-bound anti-cytokine antibodies were seeded in 384-well, 96-well, or 10-cm plates, and cultured for 2–8 days. T cells were then added at a ratio between 2:1 and 16:1 along with 25–80 ng/mL PMA. After incubation at 37°C for 16–24 hours (or for time intervals indicated in text), cells were washed with phosphate buffered saline (PBS). Cells were dissociated with 0.25% trypsin-EDTA or enzyme-free cell dissociation buffer (Thermo Fisher Scientific), pooled, and stained with fluorescently-labeled anti-IL2 antibody; alternatively, cells were stained in the plate prior to dissociation. Stained cells were washed with PBS. A subset was imaged (Zeiss Axiovert 40 CFL, Olympus CK40, or Olympus IX73) to assess fluorescence, or analyzed by flow cytometry (BD LSRFortessa). For pulldowns, PE+ cells were labeled using Anti-PE MicroBeads (Miltenyi) or PE Positive Selection Kit (StemCell Technologies), and separated from unlabeled cells using a MACS Separator (Miltenyi) or EasySep Magnet (StemCell Technologies).
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2

Murine Splenic B Cell Isolation and Tumor Cell Line

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We used a modified subclone of the AKR thymoma BW5147 that does not express endogenous TCR2. Murine splenic B lymphocytes (B220+CD3-) were magnetically sorted from C57BL/6 splenocytes stained with anti-B220-PE mAb (RA3-6B2, BioLegend) using the PE Positive Selection Kit from Stemcell technologies (Cologne, Germany). The 16.113 tumor cell line was isolated from LoxP-Tag mice and obtained from Prof. Dr. Gerald Willimsky (Charité - University Medicine Berlin, Germany) and German Cancer Research Center (DKFZ, Heidelberg, Germany).
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3

Isolation and Characterization of MDSCs

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MDSCs from the spleen were first incubated with Gr1-PE and then isolated using PE Positive Selection Kit (StemCell Technologies, Vancouver, BC, Canada), and cells with purity of >80% were used for experiments. For functional studies, MDSCs were co-cultured in a 1:1 ratio with splenocytes from tumor-bearing control mice (without MDSCs, 16 days after tumor inoculation) for 24 h, the level of IFN-γ, IL-4, IL-17, IL-21, granzyme B and perforin were assessed by flow cytometry. For T cell proliferation assays, splenocytes from naïve mice were obtained and stimulated with anti-CD3 (1 ng/mL, Biolegend, San Diego, CA, USA), after co-culture with MDSCs isolated from different groups in the E/T ratio of 10:1 for 3 days as reported by Jimenez et al. [59 (link)], T-cell proliferation was measured by the level of Ki-67 (gated on CD3) using BD LSRFortessa cytometer (BD Biosciences, Franklin Lakes, NJ, USA).
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4

Isolation and Enrichment of Megakaryocytes

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CD34+ progenitor cells were isolated and enriched from cord blood as reported previously.(51) MK cultures of 105 cells/ml were supplemented with 100 ng/ml thrombopoietin (rhTPO CellGenix, Freiburg, Germany) and 10 ng/ml IL1b (R&D, Minneapolis, MN, USA) in CellGro media (CellGenix, Freiburg, Germany). Media and cytokines were rejuvenated at days 3 and 6. At day 10, mature MKs were immunopurified using an anti-CD42b PE conjugated antibody (Pab5, NHS Blood and Transplant, IBGRL, Bristol, England) and a PE positive selection kit (STEMCELL Technologies, Vancouver, Canada). MK purity was verified by FACS and shown to be >95% for CD41a (BD, San Jose, CA, USA) and CD42b (IBGRL, Bristol, England).
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5

Isolation and Purification of Adipose Tissue Macrophages

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Stromal vascular fractions (SVF) of epididymal fat were isolated by collagenase digestion as previously detailed (21 (link)). In brief, minced adipose tissue was placed in Hank's Balanced Salt Solution containing 2% bovine serum albumin (BSA) and 1 mg/mL collagenase then homogenized with a gentleMACs dissociator (Miltenyi Biotec), and incubated for 30–40 min at 37°C with gentle shaking until fully dissociated. SVF cells were pelleted and floating adipocytes removed. SVFs were filtered, RBC-lysed, and washed, then used immediately for either flow cytometry or ATM isolation. To isolate ATMs, SVF cells were labeled with either Fluorescein isothiocyanate (FITC)- or Phycoerythrin (PE)-anti-F4/80 antibody (Clone: BM8, Biolegend) then F4/80+ ATMs were immunomagnetically selected with either FITC- or PE-Positive Selection Kit (StemCell Tech). Flow cytometry was used to evaluate selection purity, which was routinely >75%.
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6

Isolation of CD4+ T Cells and MDSCs

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For isolation of CD4+ T cells, single-cell suspensions of splenocytes from 4T1 tumor-bearing control mice (day 16 after inoculation) were isolated by an Easysep CD4+ T cell negative selection kit (StemCell Technologies, Vancouver, BC, Canada). For isolation of MDSCs, single-cell suspensions of splenocytes from indicated groups were firstly incubated with Gr1-PE (listed in Supplementary Table 1) and then isolated with a PE positive selection kit (StemCell Technologies, Vancouver, BC, Canada).
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7

Primary Lung Endothelial Cell Isolation and Tube Formation

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Normal lung tissues were digested with 2 mg ml-1 collagenase type I (Worthington Biochemical), 2 mg ml-1 collagenase type IV (Worthington Biochemical), and 0.2 mg ml-1 DNase I (Sigma-Aldrich) at 37 °C for 1 h, and terminated with culture medium containing 10% FBS. The single-cell suspension was obtained by filtering through a 70 μm cell strainer. CD31-positive primary ECs were isolated using anti-mouse CD31-PE antibodies (Biolegend, San Diego, CA, USA) and PE positive selection kit (StemCell, Vancouver, BC, Canada), and cultured in endothelial cell culture medium (Procell, Wuhan, China) for 5 days before use.
After treatment with 2 μg ml-1 IGFBP7 and/or 10 μg ml-1 M057 for 24 h, mouse primary ECs were seeded (1 × 104 cells/well) in an ibidi plate precoated with endothelial growth factor-reduced Matrigel (BD Bioscience, Sab Jose, CA, USA). Mouse primary ECs were stained with 6.25 μg/ml calcein AM (PromoKine, Heidelberg, Baden‐Württemberg, Germany) for 15 min. Images for the capillary tubes were captured under an inverted fluorescence microscope and analyzed by ImageJ (NIH) angiogenesis analyzer plugins.
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8

CD3+ T Cell Purification from Splenocytes

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CD3+ T cells were purified from splenocytes, as described previously [71 (link)]. In brief, the splenocytes were collected from mice and labeled with PE-conjugated anti-CD3 antibody (BioLegend, Clone:17A2). Immunomagnetic selection was achieved by the use of PE Positive Selection Kit (STEMCELL Technologies; Cambridge, MA, USA).
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9

T Cell Isolation and Enrichment

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For isolation of CD4+ and CD8+ T cells, spleens from the treated mice and 4T1 tumor-bearing control mice were harvested on day 21 after treatment, and single cell suspensions were prepared using a GentleMACS dissociator (Miltenyi Biotec). CD4+ and CD8+ T cells were isolated by an Easysep CD4+ T cell negative selection kit and an Easysep CD8+ T cell negative selection kit (StemCell Technologies, Vancouver, BC, Canada), respectively. CD4+ and CD8+ T cells with a purity of >90% were used for experiments. For isolation of Tregs, the isolated CD4+ T cells were then incubated with CD25-PE (clone 3C7, Biolegend, USA) and isolated with a PE positive selection kit (StemCell Technologies, Canada). The isolated cells were then verified by flow cytometry, and more than 85% of cells expressed Foxp3.
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