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5 protocols using novex wedgewell 4 12 tris glycine mini gels

1

Carbonylation Measurement in SMCs

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Healthy control SMCs were transfected with siCOQ8B or siNeg in 6-well plates in triplicate wells per condition. At 48 hours after transfection, whole cell protein lysates were extracted using RIPA as described. Samples were immediately quantified for protein and prepared for carbonylation measurement using the OxyBlot Protein Oxidation Detection Kit (Sigma) per manufacturer’s protocol. 6.4 μg protein were loaded per well and run on Novex Wedgewell 4-12% Tris-Glycine mini gels (Invitrogen). Transfer membranes were incubated in the supplied primary antibody for 1 hour at room temperature. Post-imaging densitometry analysis was performed using Image Lab™ software.
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2

Oxidative Stress Quantification in SMCs

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Healthy control SMCs were transfected with siCOQ8B or siNeg in 6-well plates in triplicate wells per condition. At 48 h after transfection, whole-cell protein lysates were extracted using RIPA as described. Samples were immediately quantified for protein and prepared for carbonylation measurement using the OxyBlot Protein Oxidation Detection Kit (Sigma) per manufacturer’s protocol. 6.4 μg protein were loaded per well and run on Novex Wedgewell 4%–12% Tris-Glycine mini gels (Invitrogen). Transfer membranes were incubated in the supplied primary antibody for 1 h at room temperature. Post-imaging densitometry analysis was performed using Image Lab software.
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3

Western Blot Analysis of C7 Protein

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Normal, blister, and mosaic fibroblasts and keratinocytes were lysed in RIPA Lysis Buffer System (Santa Cruz Biotechnology, Santa Cruz, CA, U.S.A). Lysates were clarified and measured for protein concentration using a BCA protein assay prior to loading. Equal quantities of protein were loaded onto a Novex WedgeWell 4–12% Tris-Glycine Mini Gels (Thermo Fisher Scientific, Waltham, MA, U.S.A.). Following electrophoresis, protein was transferred onto a nitrocellulose membrane and incubated with anti-C7 antibody (Ab93350, Abcam, Cambridge, MA, U.S.A.) or anti-beta Actin antibody (A2547, Millipore Sigma, Burlington, MA, U.S.A.) at 4 °C overnight. The following day, membranes were incubated with goat anti-rabbit HRP-conjugated secondary antibody (sc-2004, Santa Cruz Biotechnology) or anti-mouse HRP-conjugated secondary antibody (sc-2005, Santa Cruz Biotechnology). After incubation with secondary antibodies, blots were developed using SuperSignal West Femto Chemiluminescent Substrate (Thermo Fisher Scientific) for C7 or using SuperSignal West Pico Chemiluminescent Substrate (Thermo Fisher) for beta-Actin and developed on x-ray film for imaging.
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4

Extracellular Matrix Protein Analysis

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ABCB5+ DSCs, fibroblasts, keratinocytes and BM-MSCs were either lysed on ice for 10 minutes in RIPA Lysis Buffer for whole cell lysate (Santa Cruz Biotechnology) or cell lysis solution for extracellular matrix (ECM) protein extraction (5ml 1M NH4OH + 1.25ml Triton-100 + H2O to 250 mLs) at room temperature for one minute. ECM proteins were then dissolved in 4% SDS in 0.1M Tris·HCl. Equal quantities of protein (40 μg) were loaded onto a Novex WedgeWell 4–12% Tris-Glycine Mini Gels (Thermo Fisher). Following electrophoresis, protein was transferred onto a nitrocellulose membrane and incubated with anti-ABCB5 antibody (bs-1604R; Bioss), anti-C7antibody (sc-20774; Santa Cruz or gift from Dr. Woodley), anti-laminin alpha-3 (ab242197; Abcam), anti-laminin 332 (ab78286, Abcam), anti-laminin beta-3 (OTI3A2; Bio-rad) or anti-beta-actin antibody (A2547; Millipore Sigma) at 4°C overnight. Membranes were then incubated with goat anti-rabbit HRP-conjugated secondary antibody (sc-2004; Santa Cruz Biotechnology) or anti-mouse HRP-conjugated secondary antibody (sc-2005; Santa Cruz Biotechnology). Blots were developed using SuperSignal West Femto Chemiluminescent Substrate (Thermo Fisher) for C7, laminin alpha-3, laminin 332 and laminin beta-3 or using SuperSignal West Pico Chemiluminescent Substrate (Thermo Fisher) for beta-actin and developed on X-ray film.
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5

Histone Modification Detection by Western Blot

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Histone protein was extracted with the Histone Extraction Kit (Abcam), according to the manufacturer’s protocol. The protein samples were denatured and separated by Novex WedgeWell 4–12% Tris-Glycine Mini Gels (Thermo Fisher Scientific) and transferred onto 0.2 μm PVDF Pre-cut Blotting Membranes (Thermo Fisher Scientific). After blocking with 5% non-fat milk at room temperature for 2 hours, the membranes were incubated with primary antibodies to H3K36me2 or H3K27me3 or total H3 at 4 deg C overnight. Antibody details are in Supp. Table 1. Subsequently, the membranes were incubated with secondary antibodies for 1 hour at room temperature. Finally, protein signals were detected by Pierce ECL Western Blotting Substrate (Thermo Fisher Scientific) and visualized after exposure to the Hyperfilm ECL (GE Healthcare). The relative optical density ratio was calculated with the Image J software (RRID:SCR_003070) by comparison to H3. Original Western blot gel images and Image J data are provided in Supp. Data 2 and Supp. Data 3.
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