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2 protocols using γ irradiated m tb h37rv

1

Comprehensive Flow Cytometry Protocol for Immune Cell Analysis

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For flow cytometry, we used FITC anti-CD4, allophycocyanin (APC) anti-CD4, APC anti-CD25, PE anti-Foxp3, PE-Cy5 anti-Foxp3 (all from eBioscience), FITC anti-CD14, FITC anti-CD8, PE anti-PD1, FITC anti-D4GDI (Pierce), PE anti-IL-10, PE anti-TGF-β and PE anti-IFN-γ and PE anti-CD127 (e-Bioscience), APO-Direct TUNEL kit (e-Bioscience), Caspase-3 staining kit (BD Pharmingen) and DCFDA—Cellular Reactive Oxygen Species Detection Assay Kit (Abcam). γ-irradiated M. tb H37Rv was obtained from BEI Resources. In some experiments recombinant D4GDI (Cell Sciences) and cyclosporin A (Sigma) were used. For neutralization experiments, anti-IFN-γ (BD Pharmingen) and anti IL-22 (e-Biosciences) antibodies were used.
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2

Comprehensive Immune Cell Profiling

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FITC anti-CD4 (clone GK1.5, Biolegend), FITC anti-CD8 (Clone 53–6.7, Biolegend), FITC anti-CD14 (Clone 61D3, eBiosciences), qdot605 anti-CD14 (clone Tük4, Invitrogen), V450 anti-CD2 (clone RPA-2.10, eBioscience), anti-CD3 (clone UCHT1, eBioscience), anti-CD19 (clone HIB19, eBioscience), anti-CD20 (clone 2H7, eBioscience), anti-CD56 (clone B159, eBioscience), PE-Cy7 anti-CD16 (clone 3G8, Biolegend), APC-Cy7 anti-HLA-DR (clone L243, BD biosciences), PE anti-CD142/TF (clone HTF-1,eBioscience) and PerCP-Cy5.5 anti-TNF-α (clone MAb11, eBioscience) were used for flow cytometry, γ-irradiated M. tb H37Rv and Ag85a was obtained from BEI Resources.
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