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7 protocols using aqueous mounting medium

1

Immunofluorescence Staining of Melanoma Cells

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30,000 SK-MEL-28 melanoma cells were seeded on coverslip placed into 24-well culture plate and then incubated for 24 h in DMEM supplemented with 10% FBS at 37°C in 5% CO2. Cells were fixed with 4% paraformaldehyde in PBS (w/v) and incubated for 10 min at room temperature. After washing with PBS, cells were then incubated with biotinylated NC1(XIX), NC1(XIX) and/or anti-αvβ3 integrin antibody (MAB1976 Millipore, Molsheim, France) diluted 1/200 in 1% BSA-supplemented PBS for 1 h at room temperature. After washing with PBS, cells were incubated respectively with a 1/1000 diluted Alexa fluor 488- or 568-conjugated secondary antibody (A11057 and A11004 respectively, Invitrogen, Carlsbad, USA) in PBS supplemented with 1% BSA for 30 min in a dark chamber at room temperature. Coverslips were then mounted with aqueous mounting medium (Thermo Scientific, Villebon sur Yvette, France) and examined using a confocal laser scanning microscope (Zeiss LSH710, Carl Zeiss MicroImaging, GmbH, Germany).
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2

Standardized Single-Color IHC Protocol

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Standard single-color IHC was performed as described previously [17 (link)]. Briefly, 5 μm sections of formalin-fixed, paraffin-embedded tissue were deparaffinized and rehydrated by standard methods. Heat-induced epitope retrieval was performed in a 97°C water bath for 20 min in citrate buffer, pH 6.0 (for anti-CD1a, anti-CD3, anti-CD4, anti-CD16, anti-gp340 and their IgG negative controls), and the sections were re-equilibrated in PBS. Endogenous peroxidase and non-specific antibody binding were blocked (Ultra-V and Hydrogen Peroxide, LP Value kit), and then sections were incubated with respective primary antibodies at room temperature (30 min) or at 4°C (overnight), followed by detection with Enhancer, horseradish peroxidase (HRP)-Polymer, and diaminobenzidine tetrahydrochloride (DAB) substrate, all according to the manufacturer’s instructions (Fisher Scientific). All incubations, except non-specific protein binding (Ultra-V, LP Value Detection kit) block, were separated by washing with PBS. Coverslips were applied with aqueous mounting medium (Thermo Fisher Scientific) and photomicrographs were obtained (Olympus Corp., Tokyo, Japan). Each IHC run included sections stained with non-specific antibodies matched for species, isotype and concentration with the specific primary antibodies (negative controls).
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3

Immunohistochemical Analysis of Mouse Eyes

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Eyes enucleated from OIR mice were fixed in 4% paraformaldehyde (PFA), embedded in paraffin, and cut at 3-μm thickness. After deparaffinization, rehydration, antigen retrieval by citric acid, and blocking with 5% skim milk, the sections were incubated with the primary antibodies overnight at 4°C, and the secondary antibodies were added for 1 hr at room temperature. Nuclei were counterstained with Hoechst 33342 (Molecular Probes). After washing with PBS, the slides were coverslipped with an aqueous mounting medium (Thermo). A fluorescent microscope (BZ-9000; Keyence) was used to examine and analyze the slides.
The primary antibodies were POSTN (MAB 3548: 5 μg/mL; R&D Systems), CD31 (550274: 1:50 dilution; BD Biosciences), αSMA (F3777: 1:250 dilution; Sigma-Aldrich), F4/80 (MCA497: 1:100 dilution; AbD Serotec), CD206 (1:100 dilution; Biolegend), IL-13 (ab106732: 1:100 dilution; Abcam), and CD4 (sc-1140: 1:100 dilution; Santa Cruz). The secondary antibodies were Alexa Fluor 488 and 647 (1:100 dilution; Molecular Probes).
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4

Oil Red O Staining of Liver Tissue

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Frozen liver tissue was cut into 3-μm-thick sections, then stained with filtered Oil Red O (EMD Millipore) dissolved in 60% isopropanol for 15 min at room temperature. Afterwards, the slides were incubated in hematoxylin to counterstain the nuclei and transferred to an aqueous mounting medium (Thermo Fisher Scientific). Images were captured under a light microscope (magnification x200 and x400).
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5

Immunohistochemical Analysis of Primate Liver Grafts

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Biopsy and immunohistochemical staining was conducted as described previously15 (link). Briefly, liver biopsy samples from the recipient monkeys were fixed in 10% neutral buffered formalin, and embedded in paraffin. Paraffin-embedded tissues were 4-μm sectioned using a microtome. Each de-paraffinized and hydrated section was incubated for 30 min with primary antibody cocktails for insulin (Santa Cruz Biotechnologies, Dallas, TX), CD3 (DAKO, Agilent, Santa Clara, CA), CD4 (Santa cruz Biotechnologies), CD8, CD20, and CD68 (all from Abcam, UK), and then washed four times in TBST. After staining procedure, all of the stained slides were dried at 60 °C, and mounted with aqueous mounting medium (Thermo Fisher Scientific). For immunofluorescence staining, anti-fibrinogen antibody and anti-insulin antibody (both from Abcam) were used as primary antibodies and, Alexa 488-conjugated anti-rabbit IgG and Alexa 647-conjugated anti-mouse IgG were used as secondary antibodies, respectively. FITC-conjugated anti-monkey IgG (Acris, Germany) was used to detect antibody involvement at the graft site. The stained sample was observed by Carl Zeiss Axio Imager A1 microscope and images were taken with a micrograph with AxioVision software (Carl Zeiss, Germany).
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6

Immunofluorescence Analysis of Prostate Samples

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Murine prostate specimens from transgenic mice (see above) and human prostate cancer specimens, which were obtained from the Tissue Bank at the University of Massachusetts Medical School, were fixed in paraformaldehyde (4%), embedded in paraffin, sectioned (5 μM) and used for hematoxylin and eosin (H&E) and immunofluorescence staining. After antigen unmasking, the specimens were incubated in 10% serum in PBS for 30 minutes, washed for 3 min in PBST, and incubated with rabbit polyclonal p65 antibody (Santa Cruz), rabbit polyclonal IKKβ antibody (Santa Cruz) or HIF-1α monoclonal antibody (Novum) overnight at 4°C. The slides were washed 5 min with PBST and incubated 45 minutes in a dark chamber with the fluorochrome-conjugated secondary antibody (goat anti-rabbit conjugated Alexa Fluor 488, Life Sciences A-11008). Slides were washed and counterstained in the dark with DAPI (Invitrogen) for 10 minutes, washed with three changes of PBST and mounted under coverslips with aqueous mounting medium (Thermo Electron corp. Pittsburgh, PA). Results were analyzed using an LSM 710 Meta confocal microscope (Carl Zeiss MicroImaging Gmbh, Munich, Germany).
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7

Immunofluorescence Analysis of Prostate Specimens

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Murine prostate specimens from transgenic mice (see above) and human prostate cancer specimens, which were obtained from the Tissue Bank at the University of Massachusetts Medical School, were fixed in paraformaldehyde (4%), embedded in paraffin, sectioned (5 µM) and used for hematoxylin and eosin (H&E) and immunofluorescence staining. Immunoflurorescence staining was conducted according to the manufacturer’s instructions (Invitrogen, Life Sciences). After antigen unmasking, the specimens were incubated in 10% serum in PBS for 30 minutes, washed for 3 min in PBST, and incubated with rabbit polyclonal ERβ antibody (Gene Tex, Cat GTX 112927) or rabbit BMI-1 mAb (Cell Signaling, Cat 5856S) overnight at 4°C. The slides were washed 5 min with PBST and incubated 45 minutes in a dark chamber with the fluorochrome-conjugated secondary antibody (goat anti-rabbit conjugated Alexa Fluor 488, Life Sciences A-11008). Slides were washed and counterstained in the dark with DAPI (Invitrogen) for 10 minutes, washed with three changes of PBST and mounted under coverslips with aqueous mounting medium (Thermo Electron corp. Pittsburgh, PA). Results were analyzed with an LSM 710 Meta confocal microscope (Carl Zeiss MicroImaging Gmbh, Munich, Germany).
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