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5 protocols using sirna neat1

1

NEAT1 Regulation in Osteosarcoma

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Human normal osteoblast cell line hFOB1.19 and osteosarcoma cell lines Saos2, MG63, U2OS, SJSA1, and HOS were purchased from ATCC (Manassas VA). Cells were cultured in DMEM containing 10% FBS (Beyotime, Nantong, China), 100 μg/ml streptomycin, and 100 IU/ml penicillin (Invitrogen, USA), and maintained under 5% CO2 at 37°C. NEAT1 overexpression plasmid, NEAT1 siRNA, miR‐34a‐5p mimics and miR‐34a‐5p inhibitor were all constructed by GenePharma (Shanghai, China). Transfection was performed using Lipofectamine 2000 (Invitrogen, CA).
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2

Transient Transfection of NEAT1 and miR-410-3p

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Transient transfections were conducted using the Lipofectamine® 2000 Reagent (Thermo Fisher, USA) following the instructions from the kit. Cells were seeded onto six-well plates (3 × 105 per well) for 24 hours. NEAT1 overexpression vector was constructed from GenePharma (Shanghai,
China). NEAT1 siRNA, miR-410-3p and their negative controls were designed and synthesized from GenePharma (Shanghai, China). The sequences used in this study were: siNEAT1: 5′- GGGACAGACAGGGAGAGATG-3′; siRNA negative control: 5′- UGGUACUGGAUCCUACCUUUCCGUA-3′. miR-410-3p mimic: 5′-AAUAUAACACAGAUGGCCUGU-3′. Plasmid DNA was transfected at 1 µg/ml. siRNA or miRNAs was transfected at concentration of 25 nM. Subsequent experiments were performed 48 hours after transfections.
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3

Ethanol-Induced AML-12 Liver Cell Regulation

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Mouse liver cell line AML-12 was purchased from Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences (Shanghai, China) and cultured in DMEM-F12 medium containing 10% fetal bovine serum (FBS). Upon cell adherence, they were passaged the second day, and those in the logarithmic growth phase were used in the experiments.
AML-12 cells were stimulated by 100 mM ethanol for 24 h alone, or stimulated by 100 mM ethanol for 24 h, followed by transfection of siRNA-NEAT1 negative control (NC), siRNA-NEAT1, miR-129-5p mimic NC, miR-129-5p mimic, NEAT1 overexpression vector (overexpressed (oe)-NEAT1) together with miR-129-5p mimic NC, or oe-NEAT1 together with miR-129-5p mimic. The siRNA-NC, siRNA-NEAT1, mimic-NC, miR-129-5p mimic and oe-NEAT1 were all acquired from GenePharma Co., Ltd, (Shanghai, China).
AML12 cells were seeded in 12-well plates and cultured for 24 h before transfection. The transfection was conducted by Lipofectamine 2000 reagent (Invitrogen Inc., Carlsbad, CA, USA) when the cell confluence reached 70–90%. Transfected for 6 h, the medium was changed and cells were stimulated by 100 mM ethanol for 24 h. Finally, cells and cell supernatant were collected for the subsequent cell experiments.
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4

Modulating lncRNA-NEAT1 and UCK2 in Cancer

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Cells were transfected with the plasmid pcDNA3.1-NEAT1 to up-regulate lncRNA-NEAT1 expression, while the plasmid pcDNA3.1-UCK2 was used to overexpress UCK2. The empty plasmid pcDNA3.1 served as a negative transfection control. All plasmid were obtained from GenePharma(Shanghai, China). Small interfering RNA for lncRNA-NEAT1 (siRNA-NEAT1) UCK2 (siRNA-UCK2) and HIF-1α (siRNA- HIF-1α) were used to silence their expression (Genepharma, Shanghai, China). To upregulate candidate miRNAs, miR-mimics were obtained. AllStars Negative Control siRNA was used to transfect cells with siRNA and miR-mimics (Qiagen, Hilden, Germany). Prior to experimentation, the cells were transfected for 24 or 48 h. To obtain stably transfected SNU-182 cells, lentiviral vectors were prepared by Genechem Company (Shanghai, China) and used to deliver lncRNA-NEAT1 (Lv-NEAT1), miR-199a-3p (Lv-miR-199a-3p), and shRNA-UCK2 (Lv-shRNA-UCK2). Successful transfection was confirmed by quantitative reverse transcription-polymerase chain reaction (qRT-PCR) analysis after 48 h (Supplementary Figure 1).
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5

Overexpression and Silencing of NEAT1, UCK2, and HIF-1α

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Cells were transfected with the plasmid pcDNA3.1-NEAT1 to up-regulate lncRNA-NEAT1 expression, while the plasmid pcDNA3.1-UCK2 was used to overexpress UCK2. The empty plasmid pcDNA3.1 served as a negative transfection control. Small interfering RNA for lncRNA-NEAT1 (siRNA-NEAT1) UCK2 (siRNA-UCK2) and HIF-1α (siRNA-HIF-1α) were used to silence their expression (Genepharma, Shanghai, China).
To upregulate candidate miRNAs, miR-mimics were obtained. AllStars Negative Control siRNA was used to transfect cells with siRNA and miR-mimics (Qiagen, Hilden, Germany). Prior to experimentation, the cells were transfected for 24 or 48 h. To obtain stably transfected SNU-182 cells, lentiviral vectors were prepared by Genechem Company (Shanghai, China) and used to deliver lncRNA-NEAT1 (Lv-NEAT1), miR-199a-3p (Lv-miR-199a-3p), and shRNA-UCK2 (Lv-shRNA-UCK2). Successful transfection was con rmed by quantitative reverse transcription-polymerase chain reaction (qRT-PCR) analysis after 48 h (Additional le 1: Supplementary Fig. 1).
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