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6 protocols using pe conjugated rat igg2a

1

Multiparametric Flow Cytometry Analysis of Murine Splenocytes

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Splenocytes were collected from glycolipid‐treated mice and diluted with staining solution (PBS (pH = 7.4) containing 0.1% bovine serum albumin). For further analysis of cell subpopulations, an array of antibodies was used for surface staining. All fluorescence‐conjugated antibodies were obtained from BioLegend as follows: FITC‐conjugated CD45 (30‐F11), PE‐conjugated antimouse CD54 (YN1/1.7.4), APC‐conjugated CD3 (145‐2C11), APC/Fire750‐conjugated CD8 (53–6.7), FITC‐conjugated CD4 (GK1.5), Brilliant Violet (BV) 421‐conjugated F4/80 (BM8123137), BV605‐conjugated CD11b (M1/70), APC/Fire750‐conjugated CD11c, PE‐conjugated NK1.1 (PK136), BV510‐conjugated Ly‐6C (HK1.4), and BV785‐conjugated Ly‐6G (1A8). After blocking with TruStain fcX (antimouse CD16/32) at 4 °C for 15 min, 2 × 106 cells were stained with antibodies at 4 °C for 30 min, using 0.2 µg antibody per sample in 50 µL staining solution.
Analogously, isotypes were also applied in FACS analysis, including APC‐conjugated Armenian Hamster IgG, FITC‐conjugated rat IgG2b, APC/Fire750‐conjugated rat IgG2a, PE‐conjugated rat IgG1, PE‐conjugated rat Ig2b, PE‐conjugated mouse IgG2a, APC/Fire750‐conjugated Armenian Hamster IgG, FITC‐conjugated rat IgG2b, APC‐conjugated rat IgG2b, PE‐conjugated rat IgG2a, and PE/cy7‐conjugated rat IgG2b.k (Biolegend).
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2

Macrophage Phenotype Evaluation Protocol

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The surface markers CCR7 (M1) and CD206 (M2) were examined via flow cytometry for evaluating different macrophage phenotypes. The specific procedure is the same as described in previous studies [5 (link)]. Anti-mouse CD16/32 (Biolegend, USA) was used to block the non-specific antigens. The antibodies for flow cytometry in this study included PE-conjugated CCR7 and PerCP-conjugated CD206 (Biolegend, USA), and the isotype controls were PE-conjugated Rat IgG2a, ĸ and PerCP-conjugated Rat IgG2a, ĸ (Biolegend, USA). The expression level of M1/M2 macrophage markers of all samples was analyzed using a flow cytometer (NovoCyte, ACEA Biosciences, USA) in triplicate. In addition, the surface markers IL-1β (M1) and CD163 (M2) were detected via western blot for further evaluating different macrophage phenotypes. The first antibodies for western blot were anti-IL-1β (ABclonal, Wuhan, China, the dilution was 1:1000), anti-CD163 (ABclonal, the dilution was 1:1000) and anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (ABclonal, the dilution was 1:4000).
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3

Multiparametric Neutrophil Isolation and Profiling

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Neutrophils were isolated from BM, blood and SF according to established methods (27 (link)). Cells were blocked with 2.4G2 anti-FcγRIII/II (BD Biosciences) and stained with the following antibodies: APC-conjugated anti-murine Ly6G, FITC-conjucated anti-murine CXCR2, PE-conjucated anti-murine C5aR, FITC-conjucated anti-murine CD11a, PE-conjucated anti-murine CD11b (Biolegend), PE-conjugated anti-murine CCR1 (R&D), biotinylated anti-murine BLT1 (3D7, provided by Dr. Haribabu). Biotinylated mouse IgG1 (R&D) for BLT1, FITC-conjugated rat-IgG2a (Biolegend) for CXCR2 and CD11a, or PE-conjugated rat-IgG2a (Biolegend) for C5aR, CD11b and CCR1 were used as isotype control antibodies. After washing, BLT1 and its isotype control were incubated with PE-conjugated-streptavidin (eBioscience). Flow cytometry was performed with FACS LSRFortessa (BD Bioscience) and analyzed with Flow Jo software. Neutrophils were identified as Ly6G-positive cells in the granulocyte gate of forward and side scatter plots (fig. S7).
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4

Phenotyping Neutrophils and Tregs

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Anti-mouse CD16/32 antibody was used to block Fc receptors on PLF or spleen cells by treating them with cold for 20 minutes. Single-cell suspensions were stained with a combination of the following antibodies: PerCP-anti-CD11b (M1/70), FITC-anti-Ly6G (1A8), PerCP-anti-CD4 (GK1.5), PE-anti-CD25 (PC61), FITC-anti-Foxp3 (FJK-16s), and APC-anti-CTLA-4 (UC10-4B9) (all from BioLegend). Neutrophils were recognized as CD11b+Ly6G+, and Tregs as CD4+CD25+Foxp3+. The cells were fixed and permeabilized following the kit’s instructions (BioLegend) before being stained for Foxp3. PerCP-conjugated rat IgG2b, PE-conjugated rat IgG2a, FITC-conjugated rat IgG2b, and APC-conjugated rat IgG1 were all used as isotype controls (all from BioLegend). Fluorescence-activated cell sorting (FACS) analysis was performed using an Accuir C6 Plus cell analyzer (BD Bioscience). Flow cytometry data were analyzed with FlowJo (Tree Star, Inc., Ashland, OR, USA). For all samples, ≥1×105 cells were collected to generate scatter plots.
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5

Multicolor Flow Cytometry to Analyze Immune Cells

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Cells present in the PLF or obtained from omentum were pretreated on ice for 20 min with anti-mouse CD16/32 abs to block FC receptors. For cell surface staining, cells were stained on ice for 30 min with the following fluorescently conjugated antibodies: peridinin-Chlorophyll-Protein Complex (PerCP)-anti-CD45 (30-F11), phycoerythrin (PE)-anti-CD11b (M1/70), isothiocyanate (FITC)–anti-Ly6G (1A8), PE-anti-CD19 (6D5), and FITC–anti-CD11b(M1/70) (all from BioLegend). Neutrophils were identified by CD11b+Ly6G+, and B1 cells were identified by CD19+CD11b+. For intracellular staining, a cytofix/Cytoperm kit (BD) was used to fixed and permeabilized cells. Allophycocyanin (APC)–anti-TNF-α (MP6-XT22) and APC–anti-IL-6 (MP5-20F3) Ab were used for intracellular staining. Isotype controls used were PerCP-conjugated rat IgG2b, PE-conjugated rat IgG2a, FITC-conjugated rat IgG2b, and APC-conjugated rat IgG1 (all from BioLegend). FACS analysis was performed using a BD Accuir C6 Plus cell analyzer (BD). All data were analyzed using FlowJo (Tree Star). For all samples, at least 5×104 cells were collected to generate scatter plots.
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6

Immunophenotyping of Regulatory T Cells

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We used an anti-mouse CD16/32 antibody and 20-min cold treatment to block the Fc receptors on spleen cells. Single-cell suspensions were stained with the following antibodies (all from BioLegend, San Diego, CA): PerCP-anti-CD4 (GK1.5), APC-anti-CD3 (17A2), PE-anti-CD25 (PC61), FITC-anti-Foxp3 (FJK-16s), and APCanti-CTLA-4 (UC10-4B9). T regs were identified as being CD4+CD25+Foxp3+. Before being stained for Foxp3, cells were fixed and permeabilized according to the instructions of the antibody kit (BioLegend). Isotype controls used were PerCP-conjugated rat IgG2b, PE-conjugated rat IgG2a, FITC-conjugated rat IgG2b, and APC-conjugated rat IgG1 (all from BioLegend). Fluorescence-activated cell sorting (FACS) was conducted using a cell analyzer (Accuir C6 Plus; BD Biosciences, San Jose, CA). FlowJo (Tree Star, Ashland, OR) was used to analyze flow-cytometry data. For all samples, ≥1 × 10 5 cells were collected to generate scatter plots.
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