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3 protocols using anti mhc 2 af700

1

Multiparameter Profiling of Immune Cells

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THP-1 macrophages and bone marrow-derived macrophages were detached using ice-cold PBS, 0.1% EDTA. Lamina propria cells, peritoneal immune cells and lung immune cells were isolated as described previously.13 (link),44 (link),45 The cells were then incubated with FcR blocking antibody (Miltenyi Biotec, Bergisch Gladbach, Germany) for 10 min and stained with anti-CD45-Pacific Blue, anti-CD3-BV650, anti-NK1.1-BV650, anti-B220-BV650, anti-CD11b-BV605, anti-CD11c-PECy7, anti-Ly6C-PerCPCy5.5, anti-F4/80-Fitc, anti-CD64-PE, anti-MHC-II-AF700, anti-CD206-PE-TexasRed, anti-pSTAT6-APC (all from BioLegend, mouse cells) anti-CD124-PE, anti-CD206-APC, (all from Biolegend, human cells) for 15–30 min. ZOMBI-NIR live dead stain (BioLegend, San Diego, CA) was used for discrimination between live and dead cells in all experiments. For pSTAT6 staining, cells were permeabilized using the FoxP3 staining kit from eBioscience. Samples were acquired on an LSRII cytometer (BD, Franklin Lakes, NJ), and analyzed using FlowJo (Tree Star, Inc. Ashland, OR). For RNA expression analysis of lung immune cell susbsets, lung homogenates were sorted on a MoFlo Asterios EQ cell sorter (Beckman Coulter Life Sciences, Krefeld, Germany).
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2

Comprehensive Immune Cell Profiling of Mouse Tissues

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On the day of euthanization, one ear per mouse was harvested, followed by mechanical disruption. Tissue was digested under rotation in DMEM (41965-039, Gibco) at 37 °C with 4 mg/mL collagenase IV (17104019, Gibco). Tissue was filtered using 40 μm strainers and resuspended in FACS buffer (1% FBS, 1 mmol/L EDTA, and 0.02% NaN3 in PBS) to achieve a single-cell suspension. Samples were treated with anti-CD16/CD32 (101302, BioLegend, San Diego, California, USA, 1:100) for 20 min on ice followed by antibody staining. To analyze immune cell populations, cells were stained with anti CD45-PacificBlue (103216, Biolegend, 1:400), anti CD4-APC (100412, Biolegend, 1:400), anti γδ-TCR-PerCp AF700 (100714, eBioscience, San Diego, CA, USA, 1:400), anti CD8-APC/Cy7 (46-5711-82, Biolegend, 1:400), anti CD11b-BV605 (101257, Biolegend, 1:200), anti F4/80-PE (12-4801-82, eBioscience, 1:200), anti Ly6G-FITC (551460, BD Biosciences, 1:400), anti MHCII-AF700 (107622, Biolegend, 1:800), anti CD11c-PE/Cy7 (117318, Biolegend, 1:400), anti Foxp3-PE/eFlour610 (61-5773-82, Thermo Fisher, 1:200) and Zombie-Aqua (423102, Biolegend, 1:800) on ice for 20 min. Data were acquired on a CytoFLEX S flow cytometer (B96621, Beckman Coulter, Brea, CA, USA) using FACS Diva 6.1.3 and analyzed using FlowJo v10.5.3 (BD Biosciences).
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3

Comprehensive Flow Cytometry Analysis of Immune Cells

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For flow cytometry of immune cells, lamina propria immune cells were isolated as described.83 (link) For analysis of myeloid immune cells, the cells were washed in PBS, incubated with FcR blocking antibody (Miltenyi Biotec, Bergisch Gladbach, Germany) for 10 minutes, and stained with anti-CD45–Pacific Blue, anti-CD3–BV650, anti-NK1.1–BV650, anti-B220–BV650, anti-CD11b–BV605, anti-CD11c–PECy7, anti-Ly6C–PerCPCy5.5, anti-F4/80–APC, anti-CD64–PE, and anti–MHC-II–AF700 (all from BioLegend, San Diego, CA) for 15–30 minutes. ZOMBI-NIR live dead stain (BioLegend) was used for discrimination between live and dead cells. For cytokine staining, the cells were incubated with ionomycin and PMA in the presence of Brefeldin A for 3.5 hours before surface staining with anti-CD25–AlexaFluor700, anti-CD3–PerCPCy5.5, anti-CD4–BV510, and anti-CD8–BV570 for 15 minutes. Cells then were fixed with the FoxP3 staining kit (eBioscience) according to the manufacturer’s instructions, stained with anti-FoxP3–Pacific Blue, anti–IFN-γ–PECy7, anti-IL17–APC, anti-TNFα–BV650, and anti-IL22–PE for 30 minutes, washed in PermWash buffer (eBioscience), samples were acquired on an LSRII cytometer (BD, Franklin Lakes, NJ), and analyzed using FlowJo (Tree Star, Inc, Ashland, OR). Gating strategy for T and myeloid cells was performed as described previously.32
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