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15 protocols using easytag express protein labeling mix

1

Pulse-chase analysis of CFTR variant trafficking

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Experiments were performed as described (11 (link)). Briefly, CFBE cells expressing ΔF508-CFTR were pretreated with 3 µM VX-809 for 24 hours followed by 1-hour exposure to 1 or 0.1 µM VX-770. CFBE cells expressing ΔF508-CFTR-3S were exposed to 1 µM VX-770 for 1 hour. CFTR variants were pulse-labeled with [35S]methionine and [35S]cysteine (0.2 mCi/ml) (EasyTag EXPRESS Protein Labeling Mix, PerkinElmer) in cysteine- and methionine-free medium for 30 min and chased in full medium for 2.5 or 4.5 hours at 37°C in the presence of the indicated compounds. Radioactivity incorporated into the core- and complex-glycosylated CFTR was visualized by fluorography and quantified by phosphorimage analysis with a Typhoon imaging platform (GE Healthcare).
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2

Measuring Protein Synthesis Inhibition

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The effect of INK128 on protein synthesis was assessed by metabolic [35S]-Methionine incorporation, cells labeled with 25 µCi of [35S]-methionine/cysteine per mL (EasyTag Express Protein Labeling Mix, Perkin Elmer) in Met/Cys-free DMEM supplemented with gentamicin at 0.04 mg/mL, 5% FBS, and bovine insulin at 0.01 mg/mL, and incubated at 37°C for 30 min. Lysates were prepared using NP-40 buffer and specific activity of [35S]-methionine/cysteine incorporation into nascent protein was determined by trichloroacetic acid (TCA) precipitation onto GF/C filters and liquid scintillation counting. Studies were repeated three times and data presented as mean, normalized to the control, with SEM.
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3

Metabolic Labelling of CFTR Variants

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Metabolic labelling assays were performed as previously described [5 (link)] with the following modifications. Cells were serum starved in DMEM without methionine and cysteine (ThermoFisher Scientific, Cat. 21013024) for 45 min, and pulse-labelled in 100 μCi/mL EasyTag™ Express Protein Labeling Mix, [35S] (Perkin Elmer, Cat. NEG772) for 15 min (WT CFTR) or 1 hour (ΔF508-CFTR). Cells were rinsed with cold PBS containing 1mM MgCl2 and 0.1mM CaCl2 and chased in DMEM supplemented with 10% FBS, 2 mM glutamine, 2 mM methionine and 2 mM cysteine. Cells were harvested at 0, 1, 2, or 3 h in 500 μL RIPA buffer. Soluble material was separated by centrifugation at 20,000 x g for 5 min at 4°C. Protein concentrations were normalized using the BCA Protein Assay Kit, and pulse-labelled CFTR was isolated by immunoprecipitation with a mixture of CFTR monoclonal antibodies (Millipore, MAB3480 (1.5 μg) and MAB3484 (1.5 μg) per sample) and 50 μL protein G agarose beads (Millipore, Cat: 16–266) for 2.5 hours at 4°C. Beads were washed 3 times in RIPA buffer and proteins were eluted in Laemmli loading buffer. CFTR bands were separated by 6% SDS-PAGE and radioactive bands were detected using a Typhoon scanner (GE Healthcare), then quantified using ImageJ 1.46r software.
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4

Quantitative Protein Labeling and Analysis

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Cells were labeled with 20 µCi of [35S]methionine per ml (Easytag Express Protein Labeling Mix, PerkinElmer) in RPMI1640 for 1 h, after which cold methionine was added. 3 h prior to labeling DMSO, or PHA665752 (1 µM), or LGB321 (1 µM), or BEZ235 (0.5 µM) was added. After completion of the experiment, the cells were washed twice with PBS and lysed in lysis buffer A. Lysates were clarified by centrifugation for 10 min at 13,000×g and a fraction was used for precipitation with trichloroacetic acid on glass microfiber filters (Whatman) using vacuum filtration, and 35S-incorporation was measured by scintillation counting and normalized to total protein amount. The rest of lysates were applied to SDS-PAGE and the 35S-labeled proteins were visualized by autoradiography.
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5

Monitoring Viral Protein Synthesis in FHM Cells

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Protein synthesis was monitored in 35 mm culture dishes containing confluent monolayers of FHM cells that were mock-infected or infected with Δ18K- or wt-FV3 at a MOI of 5 PFU/cell. Virus was allowed to adsorb for 1 hr at 26°C, at which time 2 ml DMEM4 was added and incubation continued at 26°C. Using a standard protocol, cells were radiolabeled from 6 – 8 hr p.i. with methionine-cysteine free Eagle’s minimum essential medium containing Earle’s salts and 20 μCi/mL [35S] methionine-cysteine (EasyTag Express Protein Labeling Mix, Perkin-Elmer) (Mao et al., 1997 (link)). At 8 hr p.i., the labeling medium was removed, the cell monolayer lysed in 300 μL 125mM Tris-HCl, pH 6.8, 10% glycerol, 2% SDS, 0.02% 2-mercaptoethanol, 0.01% bromophenol blue and the sample denatured by boiling for 1 – 2 min. Radiolabeled proteins were separated by electrophoresis on 10% SDS-PAGE gels (Laemmli, 1970 (link)) and visualized by phosphoroimaging using a BioRad Personal Molecular Imager.
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6

Pulse-Chase Analysis of Labeled Proteins in S2 Cells

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Expression of dGCN2-CA-V5 or HA-crc was induced in stable S2 cell lines by treatment with 0.7 mM copper sulphate. Thirty minutes prior to cell harvest, ten million cells were washed in PBS and resuspended in 1 ml of cysteine- and methionine-free Dulbecco’s modified Eagle’s medium (DMEM) (MP Biomedicals, Santa Ana, CA, USA; Cat.1642454) supplemented with 10% dialysed FBS and 10% Schneider medium. 35S-labelled cysteine and methionine Easy Tag Express Protein Labeling Mix (Perkin Elmer) were added to cells for the final 10 min of the time course before addition of 20 μg/ml cycloheximide and incubation on ice. Cells were harvested and washed in cold PBS containing 20 μg/ml cycloheximide, then lysed in harvest buffer (hydroxyethyl piperazineethanesulfonic acid (HEPES) pH 7.9, 10 mM; NaCl 50 mM; sucrose 0.5 M; EDTA 0.1 mM; 0.5% v/v Triton X-100) supplemented with protease inhibitor cocktail (Roche, Welwyn Garden City, UK) and 1 mM PMSF. Post-nuclear supernatants were separated by SDS-PAGE on 12.5% acrylamide gels and stained with InstantBlue Coomassie stain (Expedeon, San Diego, CA, USA). 35S incorporation was analysed by exposure to a phosphor storage plate.
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7

CFTR Maturation Efficiency Assay

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Experiments were performed essentially as described9 (link). Briefly, 24 hours after start of compound treatment, CFBE41o- cells expressing WT- or ΔF508-CFTR were pulse-labeled with 0.2 mCi/ml 35S-methinonine and 35S-cysteine (EasyTag Express Protein Labeling Mix, PerkinElmer) in cysteine and methionine-free medium for 20 minutes at 37°C or labeled for 40 minutes and then chased 2.5 hours at 37°C in full medium. Radioactivity incorporated into the core- and complex-glycosylated glycoproteins was visualized by fluorography and quantified by phosphoimage analysis using a Typhoon imaging platform (GE Healthcare). The maturation efficiency was determined by calculating the percent of pulse-labeled immature, core-glycosylated CFTR conversion into the mature, complex-glycosylated form after 2.5 hours of chase.
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8

Viral Protein Synthesis Labeling

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PRO1190 and HFF cells were mock infected or infected with the indicated viruses (MOI = 3). At 24 hpi, the cells were labeled for 1 h with 100 µCi/ml L-[35S]methionine/L-[35S]cysteine (EasyTag express protein labeling mix; PerkinElmer) in medium lacking methionine and cysteine. The cells were then lysed in 2% SDS. Equivalent amounts of protein from each sample were separated on 10% SDS-polyacrylamide gels, dried, and visualized by autoradiography.
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9

Pulse-Labeling of HepG2 Cells with [35S]methionine

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Pulse-labeling of HepG2 cells with [35S]methionine was performed as previously described (37 (link)). Cells were treated with drugs as described above for 24 h before they were washed with media lacking methionine for 1 h. Cultures were then pulsed with [35S]methionine (200 µCi/well EasyTag express protein labeling mix; PerkinElmer) for 45 min, lysed, and separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). The gel was dried and exposed to phosphor screen for 24 h before being imaged on a Bio-Rad personal molecular imager system. Total band density was quantified using ImageJ and normalized to signal from DMSO-treated cell lysates (36 (link)).
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10

Protein synthesis inhibition by PP242

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The effect of PP242 on mRNA translation was assessed using [35S]-methionine metabolic labeling into nascent proteins. OVCAR-3 cells were cultured and treated for 24 hours with: (1) DMSO control; (2) carboplatin at 10 μM; (3) PP242 at 2.5 μM; and (4) carboplatin and PP242 in combination. After treatment, cells were labeled with 25 μCi of [35S]-methionine/cysteine/mL (EasyTag Express Protein Labeling Mix, Perkin Elmer) in Met/Cys-free DMEM supplemented with gentamicin at 0.04 mg/ml, 5% FBS, and bovine insulin at 0.01 mg/ml, and incubated at 37°C for 30 minutes. Lysates were prepared using NP-40 buffer and specific activity of [35S]-methionine/cysteine incorporation into nascent protein was determined by trichloroacetic acid (TCA) precipitation onto GF/C filters and liquid scintillation counting. Studies were repeated three times and data were presented as means, normalized to the control, with standard error of the mean (SEM).
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