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Abi prism 7900 fast real time pcr system

Manufactured by Thermo Fisher Scientific
Sourced in China

The ABI PRISM 7900 Fast Real-Time PCR system is a high-throughput, real-time PCR instrument designed for quantitative gene expression analysis and genotyping. The system features a 96-well block format and supports a wide range of fluorescent chemistries, allowing for rapid and precise nucleic acid detection and quantification.

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2 protocols using abi prism 7900 fast real time pcr system

1

Quantification of Human miR-665 and TUNEL Assay

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Total RNA was isolated from hESC-derived neurons with TRIzol reagent (Invitrogen, Shanghai, China) and reverse-transcribed into cDNA using oligo (dT)15 and ReverTra Ace reverse transcriptase (Toyobo, Osaka, Japan). NanoDrop 2000 (Thermo Scientific, Wilmington, DE, USA) was used to quantify amounts of mRNA. The qRT-PCR was performed using the ABI PRISM 7900 Fast Real-Time PCR system (Applied Biosystems, Shanghai, China) and the Power SYBR Green PCR Master Mix (Applied Biosystems, Shanghai, China) according to the manufacturer’s instructions. Mature miR-665 was detected by stem-loop qRT-PCR analysis using the Taqman Human MicroRNA Assay kits (Applied Biosystems, Shanghai, China). Small nucleolar RNU48 served as an endogenous reference RNA for normalizing the cellular content of other miRNAs.
Terminal deoxynucleotidyl transferase-mediated deoxyuridine triphosphate in situ nick end labeling (TUNEL)
hESC-derived neurons were fixed in 4% paraformaldehyde for 1 h at room temperature and then permeabilized in 0.2% Triton X-100/phosphate-buffered solution for 15 min. TUNEL staining was performed according to the manufacturer’s instructions (In Situ Cell Death Detection Kit, POD; Roche). Stained cells were analyzed using the BD FACSAria Cell Sorter.
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2

Quantifying miR-122 Expression in PBMCs

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For miR-122 analysis, RNA fraction <200 nt was extracted from PBMCs, using mirVana miRNA Isolation Kit (Ambion), and total RNA from biopsy samples using TRIzol Reagent (Invitrogen) according to the manufacturer's instructions. The reverse transcription (RT) was done, on 10 ng of RNA using the TaqMan MicroRNA Assay specific for miRNA-122 (Applied Biosystems). RT product (3.3 μL) was used in Real-Time PCR with miRNA-122-specific primers/probe mix and TaqMan Universal PCR Master Mix (Applied Biosystems). The reaction was performed on the ABI Prism 7900 Fast Real-Time PCR System (Applied Biosystems). Relative expression (r.e.) of miR-122 presents the mean Ct value for miRNA-122 Ct, calculated from triplicate reactions and normalized to average Ct values, obtained for snRNA U6.
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