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23 protocols using lymphocyte separation medium

1

Monocytic Differentiation and CD8+ T Cell Modulation by STC1

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The human BMMCs from healthy donors were isolated by density gradient centrifugation using lymphocyte separation medium (TBDscience). To analyze the effects of STC1 on monocytic differentiation, BMMCs were cultured with X-VIVO™ 15 Serum-free Hematopoietic Cell Medium (LONZA; 04-418Q) containing 50 ng/mL hSCF (R&D Systems; 255-SC-050) or/and 200 ng/mL rhSTC1 (R&D Systems; 9400-SO-050) in 5% CO2 and humidified atmosphere at 37 °C for 3 days. To analyze the effect of STC1 on CD62Lhi CD8+ Tnaïve cells, BMMCs were cultured with X-VIVO™ 15 Serum-free Hematopoietic Cell Medium (LONZA; 04-418Q) containing 200 ng/mL hIL-2 (R&D Systems; 202-IL-050) or/and 200 ng/mL rhSTC1 (R&D Systems; 9400-SO-050) in 5% CO2 and humidified atmosphere at 37 °C for 3 days.
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2

Cytokine Profiling of RA PBMCs

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PBMCs were isolated from the blood of RA patients and healthy donors as previously described.[20] Briefly, after gradient centrifugation by using lymphocyte separation medium (TBD science), mononuclear cells were collected, washed in RPMI 1640 medium (Gibco, ThermoFisher Scientific), and adjusted to 106 cells mL−1 in 1640 supplemented with 50 IU mL−1 penicillin (Gibco, ThermoFisher Scientific), 50 µg mL−1 streptomycin (Gibco, ThermoFisher Scientific), and 10% fetal bovine serum (FBS, Gibco, ThermoFisher Scientific). PBMCs (106 cells mL−1) were seeded in a 48‐well tissue culture plates (Corning, New York, USA), and then co‐incubated with anti‐CD3 (2 µg mL−1) plus anti‐CD28 (2 µg mL−1) antibody (biogems) with or without salivaricin A2 (12.5, 50, or 200 µg mL−1) or salivaricin B (12.5, 50, or 200 µg mL−1)[12] at 37 °C in air with 5% CO2. After 66 h culturing, the supernatants were collected, clarified by centrifugation (3000 rpm, 10 min, room temperature). Cytokines were measured by enzyme‐linked immunosorbent assay (ELISA) kits for IL‐10, IL‐17A, IL‐21, IFN‐γ, TNF‐α, and IL‐6 according to the manufacturer's instructions (Multisciences, Hangzhou, China). Informed consent was obtained from all subjects. This study was approved by Peking University People's Hospital Ethics Committee.
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3

Purifying Brain Cysts for Protein Analysis

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Chronically infected mice were randomly divided into 4 groups (18 mice in each group) and were treated with stress conditions for 0, 24, 48 or 72 hours respectively. At the conclusion of the treatments, mice were sacrificed and brain tissues were collected for cysts enrichment. To do that, homogenized brain tissues were subject to a density gradient centrifugation in Lymphocyte Separation Medium (TBD Science, China). In a 15 ml centrifugation tube, add 5 ml Lymphocyte Separation Medium and then add 5 ml tissue homogenates on top, the tubes were subsequently spun at 1000X g for 30min. The pellet fraction at the bottom with enriched cysts was collected for protein extraction. A trichloroacetic acid/acetone precipitation with phenol extraction method was used to isolate total proteins from enriched cysts, as previously described [37 (link)]. The concentrations of extracted proteins were measured by the Bradford protein assay before use.
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4

Multi-omics Analysis of COVID-19 Immune Responses

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All peripheral blood samples were collected into heparin vacutainer tubes (Becton Dickinson). Tubes were spun (10 min, 3000 rpm, room temperature (RT)), and plasma was collected and stored at –80 °C. PBMCs were isolated by density gradient centrifugation using lymphocyte separation medium (TBDscience), washed twice with Ca/Mg-free PBS (BasalMedia) and cryopreserved in medium containing 90% fetal calf serum (FCS) (Gibco), 10% dimethyl sulfoxide (Sigma-Aldrich) until using.
PBMCs from 16 healthy controls, 9 asymptomatic subjects, 7 presymptomatic subjects, 8 mild COVID-19 patients and 8 moderate COVID-19 patients were processed for CyTOF. Plasma from 16 healthy controls, 9 asymptomatic subjects, 8 presymptomatic subjects, 9 mild COVID-19 patients and 10 moderate COVID-19 patients were processed for Olink. Total RNA extracted from PBMCs of 15 healthy controls, 9 asymptomatic subjects, 7 presymptomatic subjects, 7 mild COVID-19 patients and 9 moderate COVID-19 patients were used for RNA-seq. 28 SARS-CoV-2pos subjects could be simultaneously analyzed by CyTOF, Olink and RNA-seq (Supplementary information, Table S1).
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5

Exosome Effects on Aged PBLs

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Peripheral blood lymphocytes from five aged-matched healthy female volunteers were isolated using lymphocyte separation medium (TBDscience, Tianjin, China) density gradient centrifugation according to the manufacturer’s instructions. Then, PBLs were purified using anti-CD45-PE antibody fluorescence-activated cell sorting performed on a Coulter Epics Elite ESP Flow Cytometer (Coulter, Brea, CA, USA). Subsequently, sorted PBLs were cultured in 6-well plates at 1 × 106 cells/well in triplicate using the AIM-V-free serum medium CTS (Gibco, Waltham, MA, USA). Isolated exosomes (three malignant exosomes or three benign exosomes, 1 × 109 exosome particles per milliter concentration) were added to each well, respectively. The cells were cultured for 48 h at 37°C. Following extensive washing in PBS to remove exosomes, all PBLs in every group were pooled to isolate RNA.
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6

Isolation and Culture of PBMCs

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Human PBMCs were isolated from blood samples collected from AFP-positive and AFP-negative patients using the lymphocyte separation medium (TBD Science) according to the manufacturer's instructions. Subsequently, the cells were cultured in serum-free haematopoietic cell medium (Takara Bio, Inc.) at 37°C in an incubator with 5% CO2.
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7

Isolation and Culture of Human Leukemia Cell Lines

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Human AML U937, THP-1, KG-1, NB4, and HL-60 cells were purchased from ATCC (Manassas, VA, United States), and were grown in RPMI-1640 medium supplemented with 10% fetal bovine serum and 2 mmol/L L-glutamine. Cell lines were maintained between 2 × 105 and 1 × 106 cells/mL, and cell viability was analyzed before each assay using a trypan blue dye exclusion assay (using viability >96%). Peripheral blood mononuclear cells (PBMC) were isolated from peripheral blood of healthy donors by differential density gradient centrifugation of blood collection. Briefly, blood was diluted 1:1 in phosphate-buffered saline (PBS) at RT prior to layering over Lymphocyte Separation Medium (TBD science, Tianjin, China, Cat# HY2015). PBMC were collected following centrifugation (800g, 20 min) and washed in PBS (320g, 10 min). Cells were resuspended in RPMI-1640 medium supplemented with 10% fetal bovine serum. This study was carried out in accordance with the recommendations of Ethics and Scientific Committee of Zhongnan Hospital of Wuhan University with written informed consent from all subjects. All subjects gave written informed consent in accordance with the Declaration of Helsinki.
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8

Immunoreaction Analysis of Ad-HBV

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To evaluate the immunoreaction of Ad-HBV, the lymphocyte subgroups in the peripheral blood were analyzed throughout the trial by a flow cytometry assay [17 (link)]. Peripheral blood lymphocytes from all animals were isolated using lymphocyte separation medium (TBDscience, Tianjin, China) density-gradient centrifugation according to the manufacturer’s instructions. The cells were then stained with specific conjugated antibodies (anti-CD4-PE, anti-CD8-APC, anti-CD45-PE Cy7, and anti-CD14-APC) and subjected to flow cytometry, respectively. The data were analyzed using FlowJo software.
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9

Comprehensive Immune Cell Profiling

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Lymphocytes in PB were purified with lymphocyte separation medium (TBD science, Tianjin, China). Then the cells surface were stained with CD3-PerCP/Cy5.5 (Biolegend, 201418, USA), CD4-FITC (Invitrogen, 11-0040-82, USA) and CD25-APC (Biolegend, 202114, USA), followed by intracellular staining with IFN-γ-PE (Biolegend, 507806, USA), IL-4-PE (Biolegend, 511906, USA), IL-17A-PE (Invitrogen, 12–7177-81, USA) and Foxp3-PE (Invitrogen, 12-5773-82, USA) using the Transcription Factor Staining Buffer Set (BD Pharmingen, USA) and protocol. The FACS method was performed with the BD FACSCantoTM IIFlow Cytometer (BD Bioscience, USA). The Th1 subsets were recognized as CD3+CD4+ and IFN-γ+ cells, the Th2 subsets were recognized as CD3+CD4+ and IL-4+ cells. The Th17 subsets were recognized as CD3+CD4+ and IL-17A+ cells, while the CD4+ and CD25+ Foxp3+ strategy was used to recognize Treg subsets.
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10

Sequencing of Maternal Leukocyte Gene

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Peripheral blood leukocytes were isolated from the mother using a lymphocyte separation medium (TBDscience, Tianjin, China). RNA was extracted using the RNA‐easy isolation reagent (Vazyme Biotech, Nanjing, China). Reverse transcription was performed using Goldenstar™ RT6 cDNA Synthesis Kit (Tsingke Biotech, Beijing, China). The fragment between exons 4 and 7 was amplified using the following primers: forward 5′‐GTTCGCAAGTGGCAATACCT‐3′, reverse 5′‐CAAGTCCTGGGCCAATTCTA‐3′. The fragment was then cloned into a vector using the 5 min. TA/Blunt‐Zero Cloning Kit (Vazyme Biotech, Nanjing, China) and sequenced with the M13 forward primer.
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