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6 protocols using blue x ray film

1

Protein Extraction and Quantification from Brain Tissues

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Brain tissues were lysed with Syn-PER Synaptic Protein Extraction Reagent (Thermo Scientific, Waltham, MA, USA) containing protease inhibitor and the cocktail of phosphatase inhibitors (Sigma Aldrich). After quantification using the Bradford assay (Bio-Rad Laboratories, Inc., Hercules, CA, USA), cytosolic samples were loaded onto an 8–15% SDS-PAGE and then transferred onto a PVDF membrane (Merck, Kenilworth, NJ, USA). The membrane was blocked with 3% BSA or 6% skim milk at RT for 1 h, incubated overnight with the appropriate primary antibody (Table 2), and then incubated with the corresponding secondary antibody at RT for 1 h after washing. Protein bands were detected using Immobilon Western Chemiluminescent HRP Substrate (Millipore, Burlington, MA, USA) and BLUE X-ray film (AGFA, Mortsel, Belgium). The density of the bands was quantified using ImageJ software v1.4.3.67 (NIH, USA).
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2

Protein Extraction and Immunoblotting Protocol

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Cells were washed once with phosphate-buffered saline (PBS) and lysed by ice-cold radioimmunoprecipitation assay (RIPA) buffer containing Xpert Protease Inhibitor Cocktail (GenDEPOT, Inc., Barker, TX, USA) and 0.5 mM sodium orthovanadate (Na3VO4). Lysates were centrifuged (12,000 g) at 4 °C for 30 min and then supernatants were used for immunoblot analysis. Proteins were separated by 10% or 12% SDS-PAGE and transferred to polyvinylidene difluoride (PVDF) membrane. The membranes were blocked by 5% skim milk in Tris-buffered saline containing 0.1% Tween-20 (TBS-T) and probed with primary antibodies followed by HRP-conjugated specific secondary antibodies. Immunoreactive blots were developed using ECL chemiluminescence system (Amersham, Buckinghamshire, UK) and exposed to blue X-ray film (AGFA, Mortsel, Belgium).
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3

Western Blot Analysis of Signaling Proteins

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Cells were lysed in ice-cold RIPA buffer containing protease inhibitors for 1 h on ice. Lysates were centrifuged (12,000×g) at 4°C for 30 min and resolved by 10% or 12% SDS-PAGE. Separated proteins were transferred to polyvinylidene difluoride membranes (Bio-Rad, Hercules, CA, USA), and then blots were probed with caveolin-1, p-caveolin-1, SHP-2, p-SHP-2, CSK, Src, p-Src, ERK, p-ERK, FAK, p-FAK and tubulin antibodies. After incubating with specific secondary antibodies, the blots were exposed to blue X-ray film (AGFA, Mortsel, Belgium) by using an enhanced chemiluminescence system (Amersham, Buckinghamshire, UK).
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4

Quantification of Phosphorylated Tau Protein

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To confirm the protein level of phosphorylated tau, we performed the western blot as previously described [24 (link)]. Briefly, the frozen cortex was homogenized using radioimmunoprecipitation assay (RIPA) buffer (150 mM NaCL, 1% NP-40, 0.5% sodium deoxycholate, 0.1% SDS, 50mM Tris, pH 8.0) containing protease inhibitors (Roche Applied Science, Mannheim, Germany) and cocktail of phosphatase inhibitors (Sigma Aldrich, St. Louis, MO, USA) and centrifuged at 13,000 rpm for 10 min at 4 °C. After lysate samples were quantified using Bradford assay (Bio-Rad Laboratories, Inc., Hercules, CA, USA), loaded onto an 10% SDS-PAGE and the proteins were transferred onto a PVDF membrane. The membrane was blocked the 3% BSA in TBS-T for 1h at room temperature and then incubated with appropriate antibody for overnight at 4 °C. After three times wash in TBS-T, the membrane incubated with secondary antibody for 1 h. The protein band was detected using ECL (Millipore, Burlington, MA, USA) and BLUE X-ray film (AGFA, Mortsel, Belgium). The band quantification was performed using the Image J software v1.4.3.67.
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5

Cytokine Profiling of Necrotic Cell-Treated CRT-MG Cells

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Cytokines, chemokines and angiogenic factors using commercially available protein array systems (Proteome profilerTM Arrays, R&D Systems) according to the manufacturer’s protocol. CRT-MG cells were either untreated or treated with necrotic cells for 24 h, and then supernatants were collected and subjected to protein array. Sample and reconstituted detection antibody mixture were incubated at RT for 1 h and the prepared mixtures were added on each membrane at 4 °C for overnight. And diluted streptavidin-HRP treated into each membrane for 30 min at RT on a rocking platform shaker. Membranes were exposed to blue X-ray film (AGFA, Mortsel, Belgium) by using chemiluminescent reagent for 3–10 min. The changed spot intensities were measured by the spot intensity divided by reference spot intensity, which using Image analysis software.
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6

Chemokine Profiling of Necrotic Cell-Treated Cells

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Chemokines secreted by necrotic cells-treated CRT-MG were screened using commercially available protein array systems (Proteome profiler™ Arrays, #ARY017, R&D Systems) according to the manufacturer's instructions. The array consists of 31 different human chemokines spotted in duplicate onto a membrane. CRT-MG cells were either untreated or treated with necrotic cells for 24 h, and then 1 ml of the supernatant and detection antibody mixture were incubated at room temperature (RT) for 1 h. Then, the prepared mixtures were added on each membrane at 4°C for overnight, and streptavidin-HRP was treated into each membrane for 30 min at RT on a rocking platform shaker. Membranes were exposed to blue X-ray film (AGFA, Mortsel, Belgium) by using chemiluminescent detection reagent (Amersham, Buckinghamshire, UK) for 3-5 min. The relative level of chemokine expression was measured by the changed spot intensity divided by control spot intensity, using Image J software (NIH, Bethesda, Maryland, USA; http://rsb. info.nih.gov/ ij/).
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