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16 protocols using ocimene

1

Synthesis of Volatile Organic Compounds

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Super Q (80/100 mesh) was purchased from Alltech (PA, USA). n-Hexane (95%, for pesticide residue analysis) was purchased from Fisher Scientific (Loughborough, Leicestershire, UK). (Z)-3-Hexenyl acetate (98%) were purchased from Alfa Aesar (Heysham, UK). Limonene (97%), cis-jasmone (92%) and linalool (96%) were purchased from TCI America (Portland, USA). α-Pinene (98%), camphene (90%), 6-methyl-5-hepten-2-one (98%), methyl salicylate (99%), ocimene (90%) (mix of (E) and (Z)-isomers), (E)-caryophyllene (80%), benzothiazole (96%), indole (98%), myrcene (97%), octanal (99%), undecane (99%), tridecane (99%), pentadecane (99%), nonanal (95%) and decanal (98%) were purchased from Sigma Aldrich (Steinheim, Germany). Geranylacetone (96%) was purchased from TCI (Tokyo, Japan). (E,E)-α-Farnesene was synthesized in three steps from isoprene and sulfur dioxide (Hassemer et al. 2016 (link)). (E)-4,8-Dimethyl-1,3,7-nonatriene (DMNT) and (E,E)-4,8,12-trimethyl-1,3,7,11-tridecatetraene (TMTT) were synthesized from geraniol and (E,E)-farnesol, respectively (Leopold 1990 ).
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2

GC-MS Analysis of Essential Oils

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The separation was achieved on a Perkin Elmer Elite-5-MS fused-silica capillary column (30 m × 0.25 mm, film thickness 0.25 µm), using helium as carrier gas at a standard flow rate of 1.1 mL/min. The temperature of the injector was adjusted at 250 °C with an initial temperature of 50 °C, initial hold 5 min, and ramp 4.0 °C/min to 280 °C. The total running time was 62.50 min and the solvent delay was from 0 to 4.0 min. MS scan time was from 4 to 62.5 min, covering mass range 50.00 to 300.00 m/z. The chemical ingredients of the EO were characterized by comparing their mass spectra with the reference spectra in the MS Data Centre of the National Institute of Standards and Technology, and by matching their Kovats and retention indices with values reported in the literature [29 (link),30 (link)]. In addition, the EOs Kovats and retention indices with values were compared with 20% of HPLC grade of reference EOs including α-pinene, eucalyptol, caryophyllene, γ-terpinene, ocimene, endo-borneol, α-terpineol, jasmone, α-cadinene, p-menthane that were purchased from Sigma-Aldrich, Hamburg, Germany) [31 (link)].
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3

SPME Fiber Cleaning and Validation

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Twenty-four SPME fibers (DVB/CARBOXEN/PDMS 50/30 μm, SupelcoTM, Bellefonte, PA) were cleaned by heating in a gas chromatograph injector at 250°C for five minutes with helium as the carrier flow. Cleaning efficiency had been previously checked in similar conditions: blank analyses confirmed that there was no carryover from the previous analysis. Fibers were controlled by GC-MS analysis after incubation in a headspace vial containing a mixture of the standard compounds ocimene, limonene, methyl salicylate caryophyllene and farnesene (Sigma-Aldrich, Saint-Quentin Fallavier, France). The variability expressed as the ratio between the mean and the standard deviation of compounds’ areas were 41, 13, 9, 22 and 30% respectively. Fibers were then wrapped in aluminum foil and stored in individual screw-capped Pyrex glass tubes until use.
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4

Phytochemical Extraction and Characterization

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Phytochemicals such as 1-cyclohexyl-2-pyrrolidone, camphene, cinnamaldehyde, citral, geraniol, L-carvone, L-limonene, L-menthol, β-myrcene, ocimene, α-terpinene, and β-terpinene (Figure 1) and other essential chemicals were purchased from Sigma-Aldrich Chemicals Pvt. Ltd., India.
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5

Microbial Culture Media and Reagent Preparation

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Thymoquinone, ocimene, and amphotericin B, foetal bovine serum, glutamine, and antibiotics (penicillin G, 60 mg/L; streptomycin, 100 mg/L; standard amphotericin B, 50 μL/L) were purchased from Sigma-Aldrich (Irvine, UK). Miramistin was purchased from Carbosynth Ltd. (Compton, UK). Dimethyl sulfoxide (DMSO) reagent grade, sodium hydroxide, disodium phosphate, and citric acid were purchased from Sigma-Aldrich (Irvine, UK). Dextrose, bacteriological peptone, yeast extract, agar number 2, Sabouraud Dextrose agar (SDA), malt extract agar (MEA), Hestrin and Schramm agar (HSA), Hestrin and Schramm media (HS), and Ringer’s solution were purchased from Lab M (Bury, UK). RPMI-1640 (Roswell Park Memorial Institute) was purchased from Fisher Scientific (Cramlington, UK). All media and reagents were prepared according to the manufacturer’s instructions.
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6

Authentic Standards for Volatile Compounds

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Authentic standards of linalool, benzyl alcohol, E-nerolidol, farnesene, phenylethyl alcohol, methyl salicylate, indole, and ocimene were purchased from Sigma Aldrich.
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7

Identification and Quantification of Terpenes

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The chemical standards used, namely ocimene (94%); limonene (96%) and α-humulene (96%); myristicin and aromadendrene (97%); α-pinene and β-pinene (98%); linalool, 1,8-cineole, β-caryophyllene, eugenol, pentadecane, heptadecane and tetradecanol (99.0%) were all purchased from Sigma-Aldrich (Saint Louis, MO, USA).
Dillapiole, asaricin, and safrole, all with a purity higher than 99.7%, were obtained via fractional distillation, as described in Section 4.2.
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8

Terpenoid Reference Standards Protocol

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Individual terpenoid reference standards, α-pinene, β-pinene, limonene, ocimene (mixture of isomers), α-phellandrene, terpinolene, geraniol, and α-bisabolol, were purchased from Sigma-Aldrich (St. Louis, MO); myrcene, 3-carene, and guaiol from Fluka Sigma–Aldrich; β-caryophyllene, α-humulene, caryophyllene-oxide, and β-eudesmol were purchased from Santa Cruz Biotech (Santa Cruz, CA). Two terpenoid mixes, Can-Terp Mix1 and Can-Terp Mix2, were purchased from SPEX CertiPrep (Metuchen, NJ) and contained camphor, β-myrcene, farnesene (mixture of isomers), p-mentha-1,5-diene, eucalyptol, isoborneol, linalool, β-caryophyllene, ocimene (mixture of isomers), caryophyllene oxide, fenchone, hexahydrothymol, α-bisabolol, camphene, 3-carene, cedrol, geranyl-acetate, isopulegol, nerol, cis-nerolidol, valencene, β-pinene, limonene, α-pinene, fenchone, borneol, geraniol, pulegone, α-humulene, α-cedrene, terpinolene, γ-terpinene, α-terpinene, guaiol, sabinene, camphor, endo-fenchyl-alcohol, trans-nerolidol, sabinene hydrate, and terpineol (mixture of isomers) in methanol. Methanol (MeOH) used in sample preparation was of ACS grade from Fisher Scientific (Waltham, MA).
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9

Detailed Volatile Organic Compound Analysis

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All VOC standards were purchased from Sigma-Aldrich (St. Louis, MO, United States): 1-penten-3-ol, 1-penten-3-one, 3-pentanone, α-caryophyllene, α-farnesene, α-pinene, β-caryophyllene, β-farnesene, β-ionone, benzaldehyde, cis-3-hexen-1-ol, cis-3-hexenyl acetate, eugenol, hexyl acetate, jasmone, limonene, linalool, methyl jasmonate, methyl salicylate, ocimene, trans-2-hexen-1-al. All VOC standards were diluted in 100% methanol.
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10

Chemical Standards Sourcing for Research

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Chemical standards were purchased from the following sources: (Z)-3-hexen-1-ol (Cas 928-96-1), α-pinene (Cas 80-56-8), sabinene (Cas 3387-41-5), β-pinene (Cas 127-91-3), 6-methyl-5-hepten-2-one (Cas 110-93-0), (+)-limonene (Cas 5989-27-5), mixture of ocimene isomers (Cas 13877-91-3), γ-terpinene (Cas 99-85-4), linalool oxide (Cas 60047-17-8), terpinolene (Cas 586-62-9), linalool (Cas 78-70-6), nonanal (Cas 124-19-6), estragole (Cas 140-67-0), decanal (Cas 112-31-2), (+)-cyclosativene (Cas 22469-52-9), tetradecane (Cas 629-59-4), methyl eugenol (Cas 93-15-2), β-caryophyllene (Cas 87-44-5), aromadendrene (Cas 489-39-4), α-humulene (Cas 6753-98-6), a mixture of farnesene isomers (Cas 502-61-4), pentadecane (Cas 629-62-9), hexadecane (Cas 544-76-3), heptadecane (Cas 629-78-7) from Sigma-Aldrich, St. Louis, MO, USA; α-copaene (Cas 3856-25-5) from Fluka Chemical Co., Buchs, SG, Switzerland), and (+)-ar-curcumene (Cas 4176-06-1), from BOC Sciences Shirley, NY, USA.
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