The largest database of trusted experimental protocols

78 protocols using digital sight ds fi1

1

Wound Healing Assay for Cell Migration

Check if the same lab product or an alternative is used in the 5 most similar protocols
Migration of SH-SY5Y cells was assessed using the wound healing assay. Cells were plated in 6-well plates at a density of 5 × 105 cells/well in complete medium. Upon reaching confluence, the monolayer of cells was cut longitudinally using a 200 μL sterile plastic tip. After three PBS washes to remove non-adherent cells, fresh HI-FBS medium containing TAG or DAG at 5 μM, or vehicle (Ctrl) was added. Cell-free area was observed, and a phase-contrast Nikon TS-100 microscope equipped with a digital acquisition system (Nikon Digital Sight DS Fi-1, Nikon, Minato-ku, Tokyo, Japan) was used to capture images at different times after scratch (0, 3, 7, and 24 h). Cell migration was analysed by measuring and quantifying wound width using the image analysis software ImageJ Version 1.53e (National Institutes of Health, Bethesda, MD, USA).
+ Open protocol
+ Expand
2

Rare DIPNECH Carcinoid Tumor Cases

Check if the same lab product or an alternative is used in the 5 most similar protocols
Between 1989 and 2013, 158 carcinoid tumors were diagnosed at Centro Hospitalar e Universitário de Coimbra (CHUC) [5 ], a tertiary and teaching hospital, serving as a reference to three million inhabitants in Portugal. Of these, 96 corresponded to typical and 27 to atypical carcinoids; the remaining cases could not be definitively graded due to the characteristics of the available material (mainly small biopsies).
We describe 3 rare cases of DIPNECH associated with tumorlets and carcinoid tumors diagnosed at CHUC, with focus on pathological features, included in the referred casuistic.
Haematoxylin-Eosin (HE) and immunohistochemistry slides were observed under a light microscope Nikon Eclipse 50i and images were obtained using a Nikon-Digital Sight DS-Fi1 camera. The characteristics of applied antibodies are summarized in Table 1.
+ Open protocol
+ Expand
3

Histopathological Evaluation of Liver Damage

Check if the same lab product or an alternative is used in the 5 most similar protocols
Liver tissue sections were made from paraffin-embedded tissues. The sections were stained with hematoxylin and eosin, and the histopathologic changes were observed under a light microscopy (Nikon ECLIPSE 50i) and the micrographs were taken with a digital camera (Nikon Digital Sight DS-Fi1, Nikon Corporation, Minato-ku, Tokyo, Japan) and NIS Elements F 3.0 (Nikon Corporation, Minato-ku, Tokyo, Japan) image acquisition software. The hepatocytes damages were conducted using a score system described by Kleiner et al [50 (link)]. Briefly, the damage score consisted of scores for glycogenated nuclei (graded 0-1, from none or rare to many continuous patches), liver cells ballooning injury (graded 0-2, from absent to severe ballooning injury) and inflammatory cells filtrate (graded 0-3, from absent to transmural). Three tissue sections from each animal were coded and examined by two blinded observers to prevent observer bias.
Biochemical parameters such as Total protein, Albumin, Aspartate aminotransferase, Alanine aminotransferase and Lactate dehydrogenase were determined using a biochemical analyzer (SPOTCHEM™EZ SP-4430, Arkray, Kyoto, Japan).
+ Open protocol
+ Expand
4

Evaluating Cell Migration via Wound Healing Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
The wound healing assay [6 (link),7 (link)] was used to test SH-SY5Y cell migration. Cells were plated in 6-well plate at 5 × 105 cells/well density in complete medium. Once cells reached confluence, a longitudinal scratch was performed through the cell monolayer using a 200 μL sterile plastic tip. Plates were then washed three times with PBS to remove non-adherent cells. Fresh starvation medium containing POE, NP-POE, PM-POE, or empty nanoformulations at appropriate dilutions was added. Cell-free area was observed under phase contrast microscopy and images were captured at 0, 5, 7, and 24 h after wounding using a Nikon TS-100 microscope equipped with a digital acquisition system (Nikon Digital Sight DS Fi-1, Nikon, Minato-ku, Tokyo, Japan). Marked edges along each wound were used to measure cell migration considering the horizontal distance between the initial scratch and the scratch following migration.
+ Open protocol
+ Expand
5

Quantification of Ki-67 in Mouse Tumors

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tumors retrieved from mice were fixed in 10% formalin (VWR Chemicals, 90240) and analyzed. Samples were then embedded in paraffin, cut into 4 μm sections. Histological examination was performed using a light microscope – Nikon Eclipse 50i, and images obtained using a Nikon-Digital Sight DS-Fi1 camera. Immunohistochemistry studies were performed on a representative block of the lesion, performed on Ventana Marker Platform Bench Mark ULTRA IHC/ISH, with an indirect multimeric detection system, biotin free, peroxidase conjugated, with anti-KI-67 antibody (Santa Cruz Biotechnology Cat# sc-23900, RRID:AB_627859).
The Ki-67 proliferative index was counted accordingly to the manual counting of camera-captured/printed image method defined for neuroendocrine tumors (Reid et al., 2015 (link)): each slide was manually scanned under a × 10 objective, for selection of the area with greatest Ki67 positivity (hot spot), with posterior photograph and print. The color image was printed on plain white paper and Ki67-negative and -positive tumor cells were then visualized and immediately marked/crossed off once counted. Light brown/pale staining nuclei were ignored for the purpose of counting.
+ Open protocol
+ Expand
6

Lipid Accumulation Assay in HepG2 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
HepG2 cells were seeded at a density of 6 × 104 in 24-well plates in NG growth medium and incubated overnight. Next, cells were treated in both NG and HG conditions with EXT in the range of 0.04 to 0.30 µg/mL (w/v) or ME-EXT, at the corresponding concentrations of EXT. Cells untreated or treated with corresponding dilutions of the empty ME were used as controls. After 24 h incubation, cells were fixed in 2% (v/v) paraformaldehyde for 10 min. After two PBS washes, wells were left to dry at 37 °C for a few minutes. At this point, a 60% (v/v) ORO solution in bi-distilled water was added at 200 µL/well and incubated at 37 °C, with stirring for 30 min. Subsequently, repeated washes in bi-distilled water were carried out to remove the excess dye. Images of intracellular lipid staining were captured using a Nikon TS-100 microscope equipped with a digital acquisition system (Nikon Digital Sight DS Fi-1; Nikon, Minato-ku, Tokyo, Japan). The staining intensity was measured by solubilizing the dye with isopropanol (200 µL/well). The absorption values were measured with an iMARK microplate reader (Bio-Rad Laboratories, Hercules, CA, USA) at a wavelength of 490 nm [75 (link)]. Cell viability values were used to normalize the ORO assay data. Values are reported in terms of the percentage with respect to untreated control cells.
+ Open protocol
+ Expand
7

Aortic Plaque Quantification and Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Aortas were pinned to black wax plates and stained with Oil Red O stock solution (1.8% v/v). Stained aortas were immersed in phosphate buffered saline (PBS) and photographed using a Nikon Digital Camera (Nikon Digital Sight DS-Fi1) mounted on Nikon Dissecting Microscope (SMZ 1000, Micron-Optics, Cedar Knolls, NJ). Image analysis was performed by NIS-Elements: Basic Research Version 3.0 (Micron-Optics, Cedar Knolls, NJ). Oil Red O stained lesion areas were measured and expressed as a percentage of total aorta area as described previously. To characterize plaque composition, histological analysis of lesions in the aortic root was performed via the Paigen method. Serial sections were stained with trichrome for lesion area measurements. Macrophage content was evaluated by CD68-positive staining via immunohistochemistry. A rat anti-mouse CD68 antibody (Cat. #: MCA1957; AbD Serotec, Raleigh, NC) was applied to paraffin-embedded and sectioned samples. Samples were processed as described [14] (link).
+ Open protocol
+ Expand
8

Immunohistochemical Analysis of Skeletal Muscle

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunohistochemistry study, frozen TA muscle sections or 3.7% PFA fixed single myofibers or cultured myogenic cells were blocked in 1% bovine serum albumin in PBS for 1 h and incubated with anti-Pax7 (1:10, Developmental Studies Hybridoma Bank, DSHB, University of Iowa, Iowa City, IA), anti-MyoD (1:200, Santa Cruz Biotechnology), anti-E-MyHC (1:200, DSHB, University of Iowa, Iowa City, IA), anti-MF20 (1:250, DSHB, University of Iowa, Iowa City, IA), anti-laminin (1:100, Sigma Chemical Company) in blocking solution at 4 °C overnight under humidified conditions. The sections were washed briefly with PBS before incubating with Alexa Fluor 488- or 546-conjugated secondary antibody (1:3,000, Invitrogen) for 1 h at room temperature and then washed three times for 5 min with PBS. The slides were mounted using fluorescence medium (Vector Laboratories) and visualized at room temperature on Nikon Eclipse TE 2000-U microscope (Nikon), a digital camera (Nikon Digital Sight DS-Fi1), and Nikon NIS Elements BR 3.00 software (Nikon). Image levels were equally adjusted using Adobe Photoshop CS6 software (Adobe).
+ Open protocol
+ Expand
9

Immunohistochemical Analysis of Skeletal Muscle

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunohistochemistry studies, frozen TA or plantaris muscle sections were fixed in acetone or 4% PFA in PBS, blocked in 2% BSA in PBS for 1 h, and incubated with mouse anti-Pax7, mouse anti-eMyHC, and rabbit anti-laminin, in blocking solution at 4°C overnight under humidified conditions. The sections were washed briefly with PBS before incubation with goat anti-mouse Alexa Fluor 594 and goat anti-rabbit Alexa Fluor 488 secondary antibodies for 1 h at room temperature and then washed three times for 15 min with PBS. Nuclei were counterstained with DAPI. The slides were mounted using the fluorescence medium (Vector Laboratories) and visualized at room temperature on a Nikon Eclipse TE2000-U microscope (Nikon), a digital camera (Nikon Digital Sight DS-Fi1), and NIS-Elements BR 3.00 software (Nikon). Image levels were equally adjusted using Photoshop CS6 software (Adobe).
+ Open protocol
+ Expand
10

Immunohistochemical Analysis of Muscle Regeneration

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunohistochemistry studies, frozen TA or plantaris muscle sections were fixed in acetone or 4% paraformaldehyde (PFA) in PBS, blocked in 2% bovine serum albumin in PBS for 1 h and incubated with rabbit anti-dystrophin, mouse anti-Pax7, mouse anti-eMyHC, rabbit anti-laminin, in blocking solution at 4 °C overnight under humidified conditions. The sections were washed briefly with PBS before incubation with goat anti-rabbit Alexa Fluor 468, goat anti-mouse Alexa Fluor 594, goat anti-rabbit Alexa Fluor 488 or goat anti-mouse Alexa Fluor 488 secondary antibody for 1 h at room temperature and then washed three times for 15 min with PBS. Nuclei were counterstained with DAPI. The slides were mounted using fluorescence medium (Vector Laboratories) and visualized at room temperature on Nikon Eclipse TE 2000-U microscope (Nikon), a digital camera (Nikon Digital Sight DS-Fi1), and NIS Elements BR 3.00 software (Nikon). Image levels were equally adjusted using Photoshop CS6 software (Adobe).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!