The largest database of trusted experimental protocols

36 protocols using wortmannin

1

Inhibition of Cell Contractility

Check if the same lab product or an alternative is used in the 5 most similar protocols
NSC23766 (50 μM), blebbistatin (50 μM), and wortmannin (50 nM) (Tocris Bioscience), were reconstituted and stored in DMSO. Drugs were added in cell media 6 hours after initial cell seeding and left for 24 hours during imaging.
+ Open protocol
+ Expand
2

Hippocampal Neuron Cholesterol Modulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following compounds were added to cell medium of hippocampal neurons and Hek‐293T: OSI‐906 (Selleckchem, Houston, TX ref.: S1091; 1 µM); Cholesterol oxidase (Choox; Calbiochem, San Diego, CA ref.: 228250; 10 IU/ml); human peptide purified IGF‐1 (Stem Cell Technologies, Canada #78022; 4 µM). For electrophysiology experiments we used: Insulin (Sigma‐Aldrich, St Louis, MO ref.: I0516; 0.5 µM); Quercetin (Sigma‐Aldrich, St Louis, MO ref.: Q4951; 20 µM); Wortmannin (Tocris, UK ref.: 1232; 0.5 µM); and Voriconazole (Hangzhou Dayangchem Co., China; 10 nM). Experiments for Cholesterol addition conducted in hippocampal slices were performed at 25ºC. Methyl‐β‐cyclodextrin‐Cholesterol (MβCD‐Ch) solution was prepared freshly at use concentration in ACSF, containing 30 µM Cholesterol Water‐soluble (Sigma‐Aldrich, St Louis, MO ref.: C4951) and 5 µM Cholesterol (Sigma‐Aldrich, St Louis, MO ref.: C3045).
+ Open protocol
+ Expand
3

U2OS Cell Shape Modulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
U2OS control and SPECC1L-kd cells were cultured in standard DMEM high glucose media supplemented with 10% fetal bovine serum (Life technologies, Carlsbad, CA). For AJ change, 2 × 105 cells were plated on 0.1% porcine gelatin treated glass (Sigma-Aldrich, St. Louis, MO), and observed for cell shape change. Cells were collected at various indicated timepoints: 4 hours post plating (t = 1), 24 hours post plating (t = 2), confluency without cell shape change (t = 3), cell shape change (t = 4), 24 hours following cell shape change (t = 5), and 48 hours following cell shape change (t = 6) (Figs. 1, 2, 3). To modulate the PI3K-AKT pathway, cells were cultured in described concentrations of PI3K-AKT inhibitor, Wortmannin (TOCRIS Biosciences, Minneapolis, MN), or activator, SC-79 (TOCRIS Biosciences, Minneapolis, MN). Media with chemicals was replaced daily.
+ Open protocol
+ Expand
4

Inhibition of GPVI Signaling Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Each inhibitor was added 20 min before stimulation with LL-37 or CRAMP. BAPTA (inhibitor of intracellular calcium release); U-73122 (phospholipase C inhibitor); GF109203X (Protein kinase C inhibitor); SB203580 (p38-MAPK inhibitor), MG101 (calpain inhibitor); wortmannin (phosphoinositide 3-kinase inhibitor); Boc-MLF (FPR1-receptor inhibitor); WRW4 (FPR2-receptor inhibitor); and A438079 (P2X7 receptor inhibitor) were all obtained from Tocris (Bristol, UK). Pertussis toxin and cholera toxin (inhibitors of G-protein signaling) and Tirofiban (GPIIb/IIIa inhibitor) were from Sigma. Abciximab was from Elly Lilly (USA). Dasatinib (inhibitor of Src-family kinases), R406 (Syk Inhibitor), and Stattic (STAT3-Inhibitor) were from Selleckchem (Houston, USA). Anti-mouse GPVI antibody was from Emfret (clone JAQ1, Cat No. M011-0). The inhibitory monoclonal antibody HGP5C4 directed against human GPVI and the respective isotype control antibody RmC7H8 were generated by immunization of Lou/C rats with an adenovirally expressed human GPVI-Fc fusion protein. The latter represents a soluble form of GPVI with the extracellular domain of human GPVI fused to the human Fc domain. 4C9 and 5C4 monoclonal antibodies (immunoglobulin G1 subtype) specifically bound to GPVI-Fc but not control Fc65 (link). RmC7H8, raised in rats against an irrelevant human antigen, served as control monoclonal antibody (mAb).
+ Open protocol
+ Expand
5

Parthenolide Suppresses TWEAK-Induced RANTES

Check if the same lab product or an alternative is used in the 5 most similar protocols
PAM212 cells (5×104) were washed with PBS and pre-treated for two hours with 10 μM parthenolide (Santa Cruz), wortmannin (Tocris Biosciences, Minneapolis, MN), or PD98059 (Cell Signaling, Beverly, MA), followed by Fc-TWEAK or control Ig for 48 hours. Supernatants were analyzed by RANTES ELISA.
+ Open protocol
+ Expand
6

Investigating Downstream Kinase Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
To investigate downstream signaling events, the following kinase inhibitors were employed: Wortmannin (upstream inhibitor of Akt), dorsomorphin dihydrochloride aka “compound C” (AMPK inhibitor), and BAPTA‐AM (Ca+2 chelator). Wortmannin, compound C, and BAPTA‐AM were purchased from Tocris Bioscience (Bristol, UK). Western blot for AKT, pAKT, and actin was performed as described above. Commercially available primary antibodies for AKT, pAKT, and secondary antibodies were used in westerns (Santa Cruz Biotechnologies, Santa Cruz, CA).
+ Open protocol
+ Expand
7

Pharmacological Manipulation of Neuronal Function

Check if the same lab product or an alternative is used in the 5 most similar protocols
Leptin (100 nM; provided by A. F. Parlow through the National Hormone and Peptide Program), Humulin (50 nM; Eli Lilly and Company), tolbutamide (200 μM; Sigma-Aldrich), tetrodotoxin (TTX; 2 μM; Tocris Bioscience), LY294002 (10 µM; Calbiochem), wortmannin (100 nM; Tocris Bioscience), 6-cyano-7-nitroquinoxaline-2,3-dione (CNQX; 10 μM; Sigma-Aldrich), AP5 (50 μM; Sigma-Aldrich), and picrotoxin (50 μM; Sigma-Aldrich) were added to the ACSF for specific experiments. All solutions were made according to the manufacturer’s specifications. Stock solutions of LY294002, wortmannin, CNQX, and picrotoxin were made by dissolution in dimethyl sulfoxide (Sigma-Aldrich). The concentration of dimethyl sulfoxide in the external solution was <0.1%. Stock solutions of leptin were made by dissolution in Dulbecco’s PBS (Gibco). Stock solutions of TTX and AP5 were made by dissolution in deionized water.
+ Open protocol
+ Expand
8

Pharmacological Modulators of Signaling Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Acetylcholine, norepinephrine, tetraethylammonium (TEA), 1H-[1,2,4]oxadiazolo[4,3-alpha]quinoxalin-1-one (ODQ), atropine, 3-isobutyl-1-methylxanthine (IBMX), indomethacin, pyrilamine, verapamil, and Nω-nitro-l-arginine methyl ester (L-NAME) were purchased from Sigma-Aldrich Co. (St. Louis, MO, USA). LY294002 and Wortmannin was obtained from Tocris (Abingdon, UK) and Alexis Biochemicals (Lausen, Switzerland), respectively.
+ Open protocol
+ Expand
9

Standardized Onion Polyphenol Extraction and Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
The brown outer layers of the onions were extracted three times with ethanol under reflux for 3 h. The combined filtrate was concentrated using a rotary evaporator, freeze dried, and stored at −20℃ until further analysis. The HPLC profile of the onion extract and the compounds identified from it was standardized using a validated HPLC assay [21 (link)]. Stock solutions of OPE were made by dissolving them in the appropriate amount in DMSO to a final concentration of 100 mg/ml, which were then stored at −20℃. GF109203X (GFX), H-89 dihydrochloride, and wortmannin were purchased from Tocris bioscience (Bristol, UK). Quercetin, luteolin and morin were purchased from Cayman Chemical (Ann Arbor, MI, USA). Stock solutions of chemicals were made by dissolving the appropriate powder mass of each chemical in either DMSO or distilled water, which were then stored at −80℃ until further use. Working solutions of chemicals were freshly made each day prior to experiments by dissolving the stock chemical solutions in electrophysiological saline solution.
+ Open protocol
+ Expand
10

Caspase-Mediated Apoptosis Pathway Modulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Chloroquine (CQ), N-acetyl-L-cysteine (NAC) and acridine orange hemi (Zinc chloride) salt were purchased from Sigma-Aldrich (Saint Louis, MO, USA). Caspase-8,-9, or -3 colorimetric assay kit and Z-VAD-FMK (a pan-caspase inhibitor) were obtained from R&D systems (MA, USA). Cycletest Plus DNA kit and FITC-Annexin V were purchased from BD bioscience Pharmingen (San Jose, CA, USA). Wortmannin and U0126 were purchased TOCRIS (Bristol, UK). 2’7’-dichlorofluorescein diacetate, BAPTA-AM, Ru360 and JC-1 were obtained from Calbiochem (San Diego, CA, USA). Dihydroethidium, lipofectamine 2000, anti-Alexa Fluor 488, Fluo4-AM and BAPTA were purchased from Invitrogen (Carlsbad, CA, USA). Rhod2 and Ruthenium Red were obtained from Abcam (Cambridge, UK). The antibodies used in this study are as follows; anti-caspase-3, anti-caspase-9, anti-caspase-8, anti-PARP, anti-ATG5, anti-total ERK, anti-p-ERK (Cell signaling Technology, MA, USA), LC3B/MAP1LC3B (NOVUS Biologicals, USA), anti-p62 lck ligand (BD bioscience Pharmingen, CA, USA), HRP-conjugated anti-rabbit IgG and HRP-conjugated anti-mouse IgG (Santa Cruz Biotechnologies, CA, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!