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1

Evaluation of Venom DNase Activity

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The DNase activity of the venom was determined by agarose gel electrophoresis/DNase radial diffusion assay. Briefly, 750 ng of calf thymus DNA was independently incubated with the N. naja (5–50 μg ml−1) venom for 60 min, at 37 °C in a final volume of 50 μl PBS. The reaction mixture was subjected to electrophoresis on 0.8% agarose gels at 50 V in TAE buffer (40 mM Tris-base and 1 mM EDTA, pH 8.0) for 1 h. Calf thymus DNA that had been treated with DNase 1 (5 U) served as a positive control. After electrophoresis, the gel was visualized and photographed on a ultraviolet transilluminator (Alliance 2.7, Uvitec). The N. naja venom DNase activity was inhibited by incubating the sample with actin (5–25 μM) for 10 min at 37 °C. Image has been cropped for presentation. Uncropped image is presented in Supplementary Fig. 11.
For radial diffusion assay, molten agarose (5 ml, 2.1%) containing herring sperm DNA (1 mg ml−1) and ethidium bromide (1 μg ml−1) was poured into wells of six-well culture plates and allowed to solidify. Seven-millimetre diameter wells were created at the centre of the dishes and loaded with E. carinatus venom (50–500 μg per well) for 24 h at 37 °C. DNase 1 (10 U) served as the positive control. After incubation, the plates were visualized and photographed on a ultraviolet transilluminator (Alliance 2.7, Uvitec).
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2

Western Blot Analysis of NGAL Protein

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Heart samples were
homogenized and solubilized in sodium dodecyl sulfate (SDS) buffer.
Protein quantification was performed using Qubit Proteinassay Kit
(Life Technologies, Monza, Italy) according to the manufacturer’s
instructions. Protein samples were mixed with a nonreducing and reducing
buffer and incubated for 5 min at either room temperature (reducing
and nondenaturating conditions) or 95 °C (reducing and denaturating
conditions). All samples were subsequently separated on a 10% gel
in SDS-PAGE and transferred onto a nitrocellulose membrane (Amersham,
Euroclone, Italy). The membrane was blocked for 1 h with 5% nonfat
milk in the TBS containing 0.5% (v/v) Triton X-100. (Sigma-Aldrich)
and incubated overnight with polyclonal goat antibodies against NGAL
(1:500, Abcam, Prodotti Gianni, Milan, Italy). Blots were developed
using the Super Signal West Femto ECL substrate (Pierce, Euroclone,
Italy). Blot image acquisition was performed using Alliance 2.7 (UVITEC,
Eppendorf, Italy) and software Alliance 2.7 1D fully automated.
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3

Quantitative Western Blot Analysis

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Tissue homogenates were standardized to DNA in SDS-PAGE sample buffer, as described 20 (link),21 (link), and separated by PAGE on a 4–12% BisTris gradient SDS gel and blotted onto polyvinylidene difluoride membranes (Invitrogen, Carlsbad, CA). Each gel had the same positive control (20 μg protein of 1% O2 hypoxia-treated Lewis Lung whole-cell lysate) to normalize the signal between blots. Membranes were probed with primary antibodies against mouse HIF-1α (1/800; R&D Systems, Minneapolis, MN), GLUT-1 (1/20000; Abcam, Cambridge, UK), CA-IX (1/800, R&D Systems), or β-actin (1/10000, R&D Systems), and with secondary anti-goat or anti-mouse horseradish peroxidase-conjugated antibodies (DAKO, North Sydney, Australia). Membranes were developed using Amersham™ ECL Plus Western blotting detection system (GE Healthcare, Auckland, New Zealand), and protein bands were detected using a digital gel-doc system (Uvitec, Cambridge, UK). Multiple exposure times were used to ensure that the signal was not saturated, and measurements were taken in the linear range. Proteins bands were quantified using Alliance 2.7 software (Uvitec) and the protein of interest normalized against the positive control following confirmation of equal loading using β-actin.
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4

Quantitative Western Blot Analysis

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Western blot analysis was carried out on extracted cell-culture and tumor samples,19 (link) and membranes were probed with primary antibodies against mouse HIF1α (1/800, AF1935), CAIX (1/800, AF2344), and β-actin (1/10,000) as loading control; all antibodies were from R&D Systems (Minneapolis, MN, USA). Secondary horseradish peroxidase-conjugated antibodies were from Agilent Technologies (Santa Clara, CA, USA). Protein bands were quantified using Alliance 2.7 software (Uvitec, Cambridge, UK) and the protein of interest normalized against a positive control (hypoxia-treated LL/2 whole-cell lysate) following confirmation of equal loading using β-actin.
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5

Western Blot Procedure for p16 and p21

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Western blot procedure was performed as previously described by Rajan et al. 2016 [25 (link)]. p16 (Bethyl Laboratories Inc., Montgomery, TX, USA; 1 : 4000) and p21 (Santa Cruz Biotechnology, Santa Cruz, CA, USA; 1 : 500) were used as primary antibodies. β-Actin (Santa Cruz Biotechnology; 1 : 750) was used to assess the uniform protein loading. Bands were analyzed by the ECL method using Alliance 2.7 (UVItec Limited, Cambridge, UK).
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6

Quantitative Western Blot Analysis

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For western blotting, total cellular lysates were separated by 10% SDS-PAGE electrophoresis under reducing conditions and transferred (wet transfer method for blotting, 120 Volts, 1 h) to PVDF membranes (Millipore). The membranes were blocked at room temperature for 1 h in 5% non-fat dry milk, and incubated overnight at +4 °C with a specific primary antibody (Human NALP-3 antibody monoclonal mouse IgG, 1:1000, Clone CL0210, Novus Biologicals; anti –ERβ, Human ERβ/NR3A2 Antibody Monoclonal Mouse IgG1, 1:1000, Clone 733930, R&D Systems, Bio-Techne Ltd., Abingdon, UK). The membranes were washed with PBST and incubated in specific horseradish peroxidase-conjugated IgG diluted 1:2000 in 5% non-fat dried milk in PBST. A bound secondary antibody was detected by chemiluminescence. Bands were analyzed using the enhanced chemiluminescence (ECL™, Amersham, UK) by chemiluminescence imaging system Alliance 2.7 (UVITEC, Cambridge, UK) and quantified by the software Alliance V1607.
As positive load control cytosolic, the β-actin band (42-kDa) was detected by a mouse monoclonal anti-human β-actin antibody, 1:5000 (Sigma-Aldrich, St. Louis, MO, USA).
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7

Protein Expression Analysis by Western Blot

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Thirty micrograms of proteins obtained from all samples were processed as previously described [29 (link)]. Blotted membranes were incubated with the following primary antibodies: rabbit anti-RUNX2 (1:750, rabbit; Sigma-Aldrich, Milan, Italy), anti-Vimentin (1:750, rabbit; Sigma-Aldrich), anti-Laminin (1:750, rabbit; Sigma-Aldrich), anti-N-cadherin (1:750, rabbit; Sigma-Aldrich) and anti-beta-actin (1:750, mouse; Santa Cruz Biotechnology, Santa Cruz, CA, USA). After five washes in PBS containing 0.1% Tween-20, membranes were incubated for 1 h at RT with peroxidase-conjugated anti rabbit and anti-mouse secondary antibodies (1:2000; ThermoFisher Scientific, Milan, Italy). Protein expression was analysed by the enhanced chemiluminescence detection method (ECL) (Amersham Pharmacia Biotech, Milan, Italy) with photo documenter Alliance 2.7 (Uvitec, Cambridge, UK). Signals were evaluated by ECL enhancing and assessed through an UVIband-1D gel analysis system (Uvitec) [30 (link)].
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8

Western Blot Analysis of IMCD-3 Cells

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IMCD-3 cells were harvested in lysis buffer (50 mM Tris pH 6.8, 5 mM EDTA, 5% glycerol, 2% SDS, 1% β-mercaptoethanol, and Protease Inhibitor Cocktail (Roche)). Lysates were centrifuged at 13.200 rpm for 1 minute at 4°C. Supernatants were collected, and 1x Laemmli loading buffer was added. Protein samples were separated using SDS-PAGE and transferred to a nitrocellulose transfer membrane (Whatman). Membranes were probed with primary antibodies, washed three times with PBST (0.25% Tween-20 in 1x PBS), probed with HRP-conjugated secondary antibodies, washed three times with PBST, and exposed to chemiluminescence reagent (Amersham). Chemiluminescence was detected with Alliance 2.7 (UVItec).
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9

Western Blot Analysis of Protein Targets

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Cellular lysates were electrophoresed on 10-12% SDS-PAGE and transferred to nitrocellulose membrane (Hybond TM ECL TM , GE Healthcare, Buckinghamshire, UK). The membranes were blocked and probed with specific antibody, followed by detection with fluorescently labeled secondary antibodies. Membranes were visualized on Alliance 2.7 (UVItec, Cambridge, England). Primary antibodies were anti-UHMK1 (KIS3B12; 1:10) [16] (link),
anti-KIST mAb (Abcam-117936; 1:1000), anti-p27 (1:1000) (sc-1641, Santa Cruz Biotechnologies), anti-phospho-p27(S10) (1:1000) (34-6300, ThermoFisher), anti-GAPDH (1:4000) (sc-32233, Santa Cruz Biotechnologies) and anti-β-ACTIN (1:20000) (A5441, Sigma). Secondary antibodies were purchased from Life Technologies (Carlsbad, CA, USA): anti-mouse (1:5000) and anti-rat (1:2000).
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10

Immunoprecipitation and Western Blot Analysis

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Next, 100 µg of proteins from whole proteins extract, was incubated overnight with Phospho-Akt Substrate Sepharose® Bead Conjugate (1:20; 9646; Cell Signaling; Danvers, MA, USA) to perform an immunoprecipitation. Beads were washed three times and were incubated at 100 °C for 5 min. The resultant immunocomplexes were resolved through precast SDS-PAGE (Any kDTM Mini-PROTEAN Precast Protein Gels, Bio-Rad); proteins were electrotransferred by a Transblot turbo system (Bio-Rad) for 30 min according to Bio-Rad protocol. Membrane was incubated with primary antibody: DJ-1 (1:1000; D29E5XP, Cell Signaling; Danvers, MA, USA). The detection of primary antibody was executed with antirabbit horseradish peroxidase conjugate secondary antibody (1:3000; Cell Signaling; Danvers; MA, USA). With SuperSignal West Femto ECL substrate (Pierce, Thermo Fisher Scientific Inc., Bremen, Germany); and images of blotted antibodies were acquired by Alliance 2.7 (UVITEC, Eppendorf, Milan, Italy). γ-Tubulin was used as loading control.
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