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20 protocols using m mlv rt system

1

Quantitative Real-Time PCR Protocol

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RNA was extracted from cell lines and tumors and using RNeasy kit (Qiagen, Venlo, Limburg), cDNA was prepared using MMLV RT system (Promega), and qPCR) was performed with total cDNA and primers for indicated genes and GAPDH or EEF1A as the endogenous control (Supplementary Table S3), using Applied Biosystems 7500 Fast RT-PCR system (Life Technologies, Grand Island, NY) and corresponding software, as we have described [54 (link)].
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2

Gene Expression Analysis by qPCR

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RNA was extracted using RNeasy kit (Qiagen, Venlo, Limburg), cDNA was
prepared using MMLV RT system (Promega), and qPCR) was performed with primers
for indicated genes and EEF1A as the endogenous control (Supplemental Table S1) as we have
described42 (link).
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3

Quantification of Gene Expression

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Total RNA was extracted from cultured cells by using TRIzol reagent (Applygen) according to the manufacturer's instructions. The isolated RNA was reversed‐transcribed into complementary DNA with the M‐MLV RT system (Promega) by using Oligo (dT) primers. Real‐time PCR was performed with the 2 × RealStar power SYBR Mixture (Genestar) by using the specific primer sets. Gene expressions were normalized against GAPDH.
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4

Quantitative RT-PCR Analysis of Renal Gene Expression

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RT-qPCR analysis was conducted as previously indicated [62 (link)]. In brief, total RNA was extracted from renal tissues or cells using Trizol reagent (Invitrogen, USA) following the manufacturer’s instructions. Then, the obtained total RNA was reverse transcribed using M-MLV-RT system (Promega, USA), which was performed at 42° C for 1 h and terminated through deactivation of the enzyme at 70° C for 10 min. Subsequently, PCR was conducted with SYBR Green (Bio-Rad, USA) on an ABI PRISM 7900HT detection system (Applied Biosystems, USA). All primer sequences used in the study were obtained from Invitrogen Corporation or Generay Biotech (Shanghai, China), and were listed in Supplementary Tables 1, 2. The quantification of each gene was analyzed according to the 2-ΔΔCt expressions. ΔΔCt represents the relative change in the differences between the control and treatment groups. Expression of each mRNA was normalized with GAPDH mRNA.
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5

RNA Extraction and qPCR Analysis

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RNAs were extracted by using TRIzol reagent (Applygen Technologies, Beijing) according to the manufacturer’s instructions, and samples were stored at −40 °C. Complementary DNAs (cDNAs) were obtained with M-MLV RT system (Promega) by using Oligo (dT) primers. Real-time quantitative PCR (q-PCR) was performed with 2X RealStar power SYBR Mixture (Genestar) by using the specific primer pairs (below). Gene expressions were normalized against GAPDH. Primers for qPCR are listed in Supplementary Table 1.
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6

Quantifying Drosophila Insulin-like Peptide Expression

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Total RNA was extracted from 60 Drosophila heads for each sample and RNA was isolated using Direct-zol RNA MiniPrep (Zymo Research) according to the manufacturer’s instructions. mRNA was transcribed to cDNA using the M-MLV RT System (Promega). Gene expression was analyzed using SYBR Green PCR Master Mix (Applied Biosystem) and normalized to expression levels of rp49. Primer sequences are as follows: dilp2 F: 5’- gaatcacgggattatactcctcg-3’, dilp2 R: 5’- atgagcaagcctttgtccttca-3’, dilp5 F: 5’- gaggcaccttgggcctattc-3’, dilp5 R: 5’-catgtggtgagattcggagcta-3’, rp49 F: 5’-ccgcttcaagggacagtatc-3’, and rp49 R: 5’-gacaatctccttgcgcttct-3’.
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7

Hypothalamic Protein and RNA Quantification

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Hypothalami were isolated as previously described14 (link). Tissue lysis, SDS/PAGE and Western blotting were performed as previously described19 (link). Primary antibodies in Western blots included anti-IκBα (Santa Cruz, #SC847, 1:500), anti-p-TAK1 (Cell Signaling, #4531, 1:1000), anti-p-IκBα (Cell Signaling, #2859, 1:1000), anti-RelA (Cell Signaling, #3039, 1:1000), anti-p-RelA (Cell Signaling, #4764, 1:1000), and anti-β-actin (Cell Signaling, #4967S, 1:1000), and secondary antibodies were HRP-conjugated anti-rabbit or goat antibody (Pierce, 1:2000). Quantification of Western blots was processed with Image J. Total RNA was extracted from hypothalamic tissue using TRIzol® (Invitrogen), and cDNA was synthesized using M-MLV RT System (Promega). Using SYBR® Green PCR Master Mix (Applied Biosystems), expression levels of target genes were analyzed via PCR amplification and quantification. GAPDH or TBP mRNA levels were used for normalization. CSF collection and TGFβ measurement: An anesthetized mouse was placed onto the stereotactic apparatus with the head forming an angle of about 135° with the body, and then a sagittal incision in the neck skin was made inferior to the occiput, followed by penetrating a capillary tube through the dura mater into the citerna magna to draw the CSF. Serum and CSF TGF-β content were measured using TGF-β ELISA kit (R&D Systems).
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8

Quantifying mRNA and Protein Expression

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Total RNA was extracted from tissues or cultured cells using TRIzol® (Invitrogen), and cDNA was synthesized using M-MLV RT System (Promega) followed by PCR amplification and quantification using SYBR® Green PCR Master Mix (Applied Biosystems). House-keeping β-actin mRNA was used for PCR normalization. Animal tissues were homogenized, and proteins were dissolved in a lysis buffer. Proteins dissolved in lysis buffer were separated by SDS-PAGE and identified by immunoblotting. Primary antibodies included rabbit anti-p-RelA (3033, Cell Signaling), rabbit anti-RelA (8242, Cell Signaling), rabbit anti-β-actin (4970, Cell Signaling), mouse anti-flag (F1804, Sigma), rabbit anti-BDNF (ab72439, Abcam) and rabbit anti-GAT3 (ab431, Abcam). Secondary antibodies included HRP-conjugated anti-mouse and anti-rabbit antibodies (Pierce).
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9

Gene Expression Analysis by qPCR

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RNA was extracted using RNeasy kit (Qiagen, Venlo, Limburg), cDNA was
prepared using MMLV RT system (Promega), and qPCR) was performed with primers
for indicated genes and EEF1A as the endogenous control (Supplemental Table S1) as we have
described42 (link).
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10

Hypothalamic Protein and RNA Quantification

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Hypothalami were isolated as previously described14 (link). Tissue lysis, SDS/PAGE and Western blotting were performed as previously described19 (link). Primary antibodies in Western blots included anti-IκBα (Santa Cruz, #SC847, 1:500), anti-p-TAK1 (Cell Signaling, #4531, 1:1000), anti-p-IκBα (Cell Signaling, #2859, 1:1000), anti-RelA (Cell Signaling, #3039, 1:1000), anti-p-RelA (Cell Signaling, #4764, 1:1000), and anti-β-actin (Cell Signaling, #4967S, 1:1000), and secondary antibodies were HRP-conjugated anti-rabbit or goat antibody (Pierce, 1:2000). Quantification of Western blots was processed with Image J. Total RNA was extracted from hypothalamic tissue using TRIzol® (Invitrogen), and cDNA was synthesized using M-MLV RT System (Promega). Using SYBR® Green PCR Master Mix (Applied Biosystems), expression levels of target genes were analyzed via PCR amplification and quantification. GAPDH or TBP mRNA levels were used for normalization. CSF collection and TGFβ measurement: An anesthetized mouse was placed onto the stereotactic apparatus with the head forming an angle of about 135° with the body, and then a sagittal incision in the neck skin was made inferior to the occiput, followed by penetrating a capillary tube through the dura mater into the citerna magna to draw the CSF. Serum and CSF TGF-β content were measured using TGF-β ELISA kit (R&D Systems).
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