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58 protocols using mab1637

1

Immunohistochemical Characterization of Enteric Nervous System

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ENS single cells were fixated with 4% formaldehyde in PBS at 5°C for 17 min on glas coverslips. Adult ENS networks were centrifuged, washed with PBS and separated from PBS residues. They were embedded in Tissue-Tek by freezing at −80°C. Tissue-Tek slices (10 μM) were made with a Kryostat and fixated with ice cold Acetone 70% (Applichem, 70% + 30% water). As primary antibodies rabbit anti iNOS (polyclonal, ab15323, Abcam), rabbit anti GFAP (polyclonal, Z0334, Dako, Germany) and mouse anti Tubulin β III (monoclonal, MAB1637, Merck Millipore, Germany) were used. Alexa Fluor 594 goat anti rabbit (Invitrogen, USA) and goat anti mouse 488 (Invitrogen, USA) were used as secondary antibodies. Rabbit IgG (Dako, Germany) was used for the isotype control. 4′,6-diamino-2-phenylindole (DAPI, Sigma-Aldrich, Germany) was used for nuclear stainings.
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2

Graphene-Induced Neurogenic and Osteogenic Differentiation

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hMSCs were cultured on test graphene substrates for 24 and 72 hours in the absence or presence of electrical stimulation and then detached with Trypsin (Invitrogen, Carlsbad, CA). After adding complete media to deactivate the Trypsin, cells were collected by centrifugation. Cells were then washed with FACS buffer (PBS without Ca/Mg2+, 1% FBS, 0.1% NaN3) twice and fixed in 1% paraformaldehyde at room temperature for 10 minutes. The cells were then permeabilized using FACS buffer with 0.1% saponin; washed once in FACS buffer; and then centrifuged to a pellet. The supernatant was discarded. Class III β3 tubulin (MAB1637, EMD Millipore, Billerica, MA) and Osteopontin (AB8448, Abcam, Cambridge, MA) were diluted 1:100 in FACS buffer plus 0.1% Triton-X 100 and treated on the cells (50μl /sample). The cells were incubated with primary antibodies for 1 hour at 4°C; washed once in 1 ml FACS buffer plus 0.1% Triton-X 100; and centrifuged; and the supernatant was discarded. Secondary antibodies specific to the primary IgG isotype were diluted in FACS buffer plus 0.1% Triton-X 100 with a final sample volume of 100μl at 1:1000 dilution. The cells were incubated for 60 minutes in the dark at 4°C; washed in FACS buffer plus 0.1% Triton-X 100; and resuspended in 300μl FACS buffer for analysis. Results were analyzed using FlowJo v8.5.2 (FlowJo LLC, Ashland, OR).
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3

Mesenchymal Stem Cell Characterization and Neural Differentiation

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Cells were seeded at a density of 1 × 104 cells/well in a chamber slide (Lab-Tek II, system 154534) previously coated with 0.1% gelatin. Forty-eight hours after, cells were washed twice with PBS and fixed with 4% paraformaldehyde solution for 20 min. Cells were washed with PBS/BSA solution (1:10) followed by permeabilization with 1X Triton X-100 and 10% Normal Calf Serum (NCS) solution. Cells were then incubated overnight at 4°C with the following primary antibodies: CD105 (Ab44967, 1:200), CD90 (Ab23894, 1:200), CD44 (Ab6124, 1:200), and β-Integrin (Ab52971, 1:200) for MSC characterization. Neural differentiation was assessed with the following antibodies: MAP2 (ab11267, 1:1000), SOX2 (ab5603, 1:500), GFAP (Sigma g3893, 1:500), β-tubulin (Merck MAB1637, 1:500), and Nestin (AB105389, 1:1000). Secondary antibodies used in both immunocytochemistry were Alexa 488 (Thermo Fisher A11034, 1:200) and Alexa 568 (Thermo Fisher A-11004, 1:200). Cell imaging was performed with a ZEISS Axio Vert. A1 microscope.
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4

Teratoma Formation Assay for Pluripotency

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hESCs were treated with digoxin (2.5 μM), lanatoside C (2.5 μM), or DMSO control for 24 hours. Approximately 106 treated cells were mixed with 105 MEFs to promote teratoma formation in 50 μl PBS56 (link). The cells mixture and 1x Matrigel Matrix was mixed well and the cells were subcutaneously injected into NOD scid gamma mice (NSG mice) for 8 weeks. After 8 weeks, animals were sacrificed and teratoma was removed, fixed in 10% formalin, embedded in paraffin and stained with hematoxylin and eosin. H&E stain protocol was modified from previous study57 (link). For immunohistochemistry, teratoma sections were blocked using 5% milk for 1 hour, and stained with primary antibody at 4 °C overnight, follow by secondary antibody (Dako, Santa Clara, CA, USA) for 1 hour at RT and DAB enhancer (Dako). Primary antibody: anti-human alpha-1-fetoprotein (A0008, Dako) for endoderm lineage; anti-human smooth muscle actin, clone 1A4 (M0851, Dako) for mesoderm lineage; anti-Tuj1 (MAB1637, EMD Millipore, Darmstadt, Germany) for ectoderm.
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5

Immunocytochemical Characterization of Cell Cultures

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Cells cultured in serum-containing media were fixed with 4% PFA for 10 min and permeabilized with 0.1% Triton X-100 on day 7. The cells were blocked with 3% bovine serum albumin and 0.3% Triton-X100 in phosphate-buffered saline (PBS) for 30 min. The cells were stained with antibodies against GFAP (1:1000), MBP (1:500, MAB386, Merck Millipore), Iba1 (1:300, 019-19741, Wako), NeuN (1:300, MAB377, Merck Millipore), β-III tubulin (1:500, MAB1637, Merck Millipore), BrdU (1:25, B44, BD Biosciences, Franklin Lakes, NJ, USA), and Ki67 (1:300, bs-2130, Bioss, Woburn, MA, USA). Immunocytochemical labeling was visualized with Alexa Fluor™ 488 (1:200, Thermo Fisher Scientific) or Cy3 (1:200, Jackson ImmunoResearch Laboratories, West Grove, PA, USA)-conjugated secondary antibodies. Cell nuclei were visualized using DAPI (D1306, Molecular Probes, Eugene, OR, USA).
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6

Immunophenotyping of Neural Cell Types

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Cells (1 × 106) were washed twice with HEPES-buffered saline, treated with Accutase (ThermoFisher, A1110501), and fixed for 20 minutes at room temperature in 2.0% PFA. Cell membranes were permeabilized by adding 0.1% TritonX-100 in PBS for 20 minutes at room temperature. Cell pellets were collected and incubated with primary antibodies diluted in blocking solution: mouse anti-Olig2 (1:200; Merck Millipore, MAPN50), mouse anti-beta III tubulin (1:150; Merck Millipore, MAB1637), mouse anti-GFAP (1:200; Merck Millipore, MAB360), rabbit anti-TTR (1:300;; ABBIOTC, 250892) and incubated overnight at 4 °C. After washing, secondary antibodies anti-rabbit Alexa Fluor-488 (Invitrogen, A-11008) or anti-mouse Alexa Fluor-555 (Invitrogen, A-21427;), were diluted in PBS and incubated for 1.5 hours at room temperature. Flow cytometric evaluation was conducted within 5 minutes. Cells were analyzed by flow cytometry using an EPICS XL-MCL FACScan (Becton–Dickinson, Mountain View, CA, United States).
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7

Immunostaining of Neuronal Cultures

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Cultured hippocampal neurons and Neuro 2a cells were fixed in 4% paraformaldehyde for 15 min at room temperature, and permeabilized in 0.3% Trinton-X100 for 10 min. Primary antibodies against GFP (MBL598; Merck; 1:500), Myc (sc-40; Santa Cruz Biotechnology; 1:200), cleaved caspase-3 (Asp175, Cell Signaling Technology, Inc; 1:800) andβIII tubulin (MAB1637; Merck; 1:500) were used. Nuclei were visualized with DAPI (Sigma). Imaging was performed using a light and fluorescence microscope (BZ-X700, KEYENCE).
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8

Immunofluorescence Staining of Frozen Tissue

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Frozen sections were washed in PBS with 0.2% Triton X-100 (PBST) and blocked with 5% normal donkey serum (NDS) for 1 h. The slides were then incubated with primary antibodies mixed in 1% NDS overnight at 4°C. Antibodies against TCF7L2 (1:500; 2569, Cell Signaling Technology), Cav3.1 (1:500; MABN464, Sigma-Aldrich, NeuroMab clone N178A/9), β-galactosidase (1:100; AB986, Merck Millipore), L1CAM (1:500; MAB5272, Merck Millipore), PAX6 (1:100; PRB-278P, BioLegend), KI-67 (1:100; AB9260, Merck Millipore), TUJ1 (1:65; MAB1637, Merck Millipore), NKX2-2 (1:50; 74.5A5, Developmental Studies Hybridoma Bank), SIX3 (1:100; 200-201-A26S, Rockland), POU4F1 (1:300; Fedtsova and Turner, 1995 (link)) were used. Sections were then incubated for 1 h with appropriate secondary antibody conjugated with Alexa Fluor 488 or 594 (1:500; A-21202, A-21207 and A-11076, Thermo Fisher Scientific). The slides were additionally stained with Hoechst 33342 (1:10,000; 62249, Thermo Fisher Scientific), washed and mounted with Vectashield Antifade Mounting Medium (H1000, Vector Laboratories).
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9

Immunostaining of Neural Progenitors and Neurons

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All neural progenitors, including MGE cells, and further differentiated cells, including MGE cell-derived GABAergic neurons, were fixed in 4% paraformaldehyde and stained with the following primary antibodies: nestin (MAB5326, EMD Millipore), Pax6 (Developmental Studies Hybridoma Bank), FoxG1 (sc-48788, Santa Cruz Biotechnology), MAP2 (MAB3418, AB5622, EMD Millipore), Tuj1 (MAB1637, EMD Millipore; MRB-435P, Covance), apoE (178479, Calbiochem), PHF1 (gift from Peter Davies), AT8 (MN1020, Thermo Fisher Scientific), AT180 (MN1040, Thermo Fisher Scientific), Tau5 (577801, EMD Millipore), total-tau (T6402, Sigma), NKX2.1 (sc-13040, Santa Cruz Biotechnology), GABA (A2052, Sigma), and cleaved Caspase-3 (D3E9, Cell Signaling Technology). The secondary antibodies were IgG-conjugated Alexa Fluor 488 or Alexa Fluor 594 (Life Technologies). Nuclei were stained with DAPI. Images were taken with a Leica epifluorescence microscope, a Keyence BZ-9000E fluorescence microscope, or a Leica confocal imaging system.
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10

Immunostaining of Neural Progenitors and Neurons

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All neural progenitors, including MGE cells, and further differentiated cells, including MGE cell-derived GABAergic neurons, were fixed in 4% paraformaldehyde and stained with the following primary antibodies: nestin (MAB5326, EMD Millipore), Pax6 (Developmental Studies Hybridoma Bank), FoxG1 (sc-48788, Santa Cruz Biotechnology), MAP2 (MAB3418, AB5622, EMD Millipore), Tuj1 (MAB1637, EMD Millipore; MRB-435P, Covance), apoE (178479, Calbiochem), PHF1 (gift from Peter Davies), AT8 (MN1020, Thermo Fisher Scientific), AT180 (MN1040, Thermo Fisher Scientific), Tau5 (577801, EMD Millipore), total-tau (T6402, Sigma), NKX2.1 (sc-13040, Santa Cruz Biotechnology), GABA (A2052, Sigma), and cleaved Caspase-3 (D3E9, Cell Signaling Technology). The secondary antibodies were IgG-conjugated Alexa Fluor 488 or Alexa Fluor 594 (Life Technologies). Nuclei were stained with DAPI. Images were taken with a Leica epifluorescence microscope, a Keyence BZ-9000E fluorescence microscope, or a Leica confocal imaging system.
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