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15 protocols using p1081

1

Western Blot and Immunoprecipitation Analysis

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For IB analysis, cell lysis buffer (P0013, Beyotime) supplemented with PMSF (ST506, Beyotime) and phosphatase inhibitor cocktail was used to lyse the cells (P1081, Beyotime). Proteins were isolated using polyacrylamide gel electrophoresis with sodium dodecyl sulfate and then transferred to polyvinylidene fluoride (PVDF) membranes. The membranes were blocked with 5% non-fat milk and the indicated primary antibodies at 4 °C overnight. After being washed three times with TBST buffer, the cells were incubated with the HRP-conjugated secondary antibodies (SA00001-1, SA00001-2; Proteintech) and detected by using chemiluminescence (34580, Thermo Fisher).
For IP analysis, cell lysis buffer (P0013, Beyotime) containing PMSF and phosphatase inhibitor cocktail was used to lyse the cells for IP analysis (P1081, Beyotime). Cell lysates were first precleared with protein A/G agarose, and then were incubated with the indicated primary antibodies at 4 °C overnight. The next day, 40 μl of protein A/G-agarose beads were added and incubated for 4 h at 4 °C. After washing three times, the mixture was resuspended. After boiling and centrifugation to pellet the agarose beads, supernatants were subjected to IB analysis.
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2

Western Blot Analysis of Kidney Proteins

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Western blots were performed as previously described [25 (link)]. Total protein was extracted from kidney tissue in RIPA lysis buffer (25 mM Tris-HCl, 25 mM NaCl, 0.5 mM EDTA, 1% Triton X-100, and 0.1% SDS) with 1% PMSF protease inhibitors (P1005, Beyotime Biotechnology, China) and phosphatase inhibitors (P1081, Beyotime Biotechnology, China) added. Equal amounts of protein were separated by 10-15% SDS-PAGE and then transferred to PVDF membranes (IPVH00010, Millipore, Germany). After blocking with 5% nonfat milk for 3 h, the membranes were incubated with the primary antibodies including TGF-β1, α-SMA, Nrf2, HO-1, NQO1, ASC, caspase-1 (ab215715, ab32575, ab137550, ab13248, ab80588, ab175449, ab1872, Abcam, UK), p-Smad2, Smad2, p-Smad3, Smad3, E-cadherin, NLRP3 ((#18338, #5339, #9520, #9523, #3195, #15101, Cell Signaling Technology, USA), and cleaved caspase-1 (AF4005, Affinity Biosciences, USA) at 4°C overnight. Then, the membranes were washed 3 times with TBST and incubated with the secondary antibodies for 1 h at room temperature. After washing with TBST for a further three times, the protein bands were visualized by enhanced chemiluminescence (32134, Thermo, USA) solution and imaged with Automated Imaging System (Gene Gnome5, Synoptics Ltd, UK). GAPDH or β-actin was assumed to be similarly abundant in all samples and was used as a loading control.
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3

Hippocampal Cytokine Profiling by ELISA

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A mixed solution of radio immunoprecipitation assay lysis buffer (RIPA, P0013C, Beyotime, Shanghai, China), phenylmethanesulfonyl fluoride (PMSF, ST506, Beyotime, Shanghai, China), and phosphatase inhibitor (P1081, Beyotime, Shanghai, China) was added to the hippocampal tissue to extract the total protein. Then, the hippocampal tissue was thoroughly ground and centrifuged at 13,000 rpm for 5 min at 4 °C, and the centrifuged supernatant was collected and assayed for the protein concentration using the BCA protein assay kit (BL521A, Biosharp, Guangzhou, China). Each mouse took 10 μL of hippocampal tissue samples for ELISA detection. The concentrations of proinflammatory cytokines in the hippocampus, including TNF-α (FEK0527, BOSTER, Wuhan, China) and IL-1β (EK0394, BOSTER, Wuhan, China), were detected by a commercial ELISA kit. The experimental procedures were carried out in strict accordance with the manufacturer’s instructions. The concentrations of TNF-α and IL-1β were presented as pg/mg protein.
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4

Quantifying IL-10 in Colon Tissue

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For extracting total protein, the liver was homogenized in a mixture of RIPA buffer (P0013C, Beyotime, Shanghai, China), 2% phosphatase inhibitor (P1081, Beyotime, Shanghai, China) and 1% phenylmethanesulfonyl fluoride (PMSF, ST506, Beyotime, Shanghai, China). Following centrifugation at 14,000 r/min for 15 minutes at 4°C, supernatants were collected. The level of il-10 (EK0417, Boster, Wuhan, China) in colon was quantified by using commercial ELISA kit according to the manufacturer’s instructions. The detection limit of the kit is 15.6-1000 pg/ml for il-10.
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5

Exogenous Co-Immunoprecipitation Workflow

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For exogenous coimmunoprecipitation, 293 T cells seeded in 10 cm Petri dishes were lysed in 400 µl EBC buffer (50 mM Tris, pH 7.5, 120 mM NaCl, 0.5% NP-40) supplemented with protease inhibitors (Roche, 04693159001) and phosphatase inhibitors (Beyotime, P1081). The 400 µl lysate supernatant was divided into 160 µl Flag-IP group, 160 µl HA-IP group and 80 ul Input group. For the IP groups, 8 µl anti-Flag beads and 8 µl anti-HA beads were added to the Flag-IP group and HA-IP group, respectively, and incubated for 3-4 h at 4 °C. After incubation, the IP products were washed three times in NETN buffer(100 mM NaCl, 20 mM Tris pH 8.0, 1 mM EDTA, 0.5% NP-40) and resolved in 35 ul 3x loading buffer for immunoblotting. For the input groups, add 40 µl 3x loading buffer was added into 80 µl lysates for immunoblotting. Immunoblotting assays were performed as previously described [52 (link)].
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6

Protein Extraction and Western Blot Analysis

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For protein extraction, mESCs were lysed using RIPA buffer (Beyotime, P0013B) supplemented with protease inhibitors (Beyotime, P1005) and phosphatase inhibitors (Beyotime, P1081), and then, the lysates were centrifuged at 12,000 rcf and 4 °C for 20 min. The protein concentration of the supernatant was determined using the BCA Protein Assay (Thermo, 23227) and then normalized. Equal amounts of protein samples were separated using 15% SDS‒PAGE gels and then transferred to 0.2 μm PVDF membranes (Millipore, ISEQ00010). Membranes were blocked with TBST supplemented with 5% BSA at room temperature for 1 h and then incubated with primary antibodies at 4 °C overnight. Next, the membranes were washed three times using TBST followed by HRP-conjugated secondary antibodies for 1 h at room temperature. The membranes were visualized with the chemiluminescence reagent ECL (Thermo, 34577).
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7

Alkaline Phosphatase Treatment of Immunoprecipitated Proteins

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Samples used for the alkaline phosphatase treatment were processed as described for Western blotting, except that after the lysis buffer washes, PBS was added to the immunoprecipitated proteins bound to the beads. Samples were treated with alkaline phosphatase (D7027; Beyotime) in the presence or absence of alkaline phosphatase inhibitor (P1081; Beyotime) and incubated for 1 h at 30°C with occasional shaking. Untreated samples were used as controls. The immunoprecipitated proteins were then washed twice with the wash buffer without protease inhibitors and released from the beads by boiling in SDS loading buffer.
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8

Western Blot Analysis of Cell Signaling Proteins

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The total protein from the skin of each mouse was lysed in RIPA lysis buffer (Beyotime, P0013D, Shanghai, China) containing PMSF (Beyotime, ST506, Shanghai, China) and phosphorylated protease inhibitors (Beyotime, P1081, Shanghai, China), and 30 ug of total protein was used for each blot. The samples were separated by SDS-polyacrylamide gels and then transferred onto a nitrocellulose filter membrane (NC, Millipore, USA). After closure of the blocking solution for 1 h, the membranes were incubated overnight with 1:1000 dilutions of anti-STAT3(CST, #9139, Boston, American), p-STAT3 (CST, #9145, Boston, American), CDK1 (Proteintech, Cat No. 19532-1-AP, China), CDK2 (Proteintech, Cat No. 10122-1-AP, China), CyclinA2 (Proteintech, Cat No. 18202-1-AP, China), CyclinB1 (Proteintech, Cat No. 55004-1-AP, China) and αTubulin (Proteintech, Cat No. 11224-1-AP, China) primary antibodies. After washing with TBST, the membranes were incubated with the secondary antibodies anti-rabbit IgG (H+L) (DyLight™ 800, Cell Signaling Technology, USA) at a 1:30,000 dilution and then imaged using a LiCor Odyssey scanner (LI-COR, USA).
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9

Liensinine-induced Apoptosis and Autophagy

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Cells were seeded into 6-well plates with 1105 cells each well. Liensinine was prepared for different concentrations (0, 2.5, 5, 10, or 20 μM) and added into the wells for 48h. After washing PBS for 3 times, cells were lysed with lysis buffer (P0013 J, Beyotime, China) supplemented with protease inhibitor (P1005, Beyotime, China) and phosphatase inhibitor (P1081, Beyotime, China). After centrifuging at 12000 × g for 15 min at 4°C, the concentration of the supernatant was detected by a BCA kit (23225, Thermo Fisher Scientific, USA). And then, Western blot assay was carried out in a routine process [22 (link)]. The results were visualized using ECL substrate reagent kit (32209, Thermo Fisher Scientific, USA) or detected by exposure to a film. The primary antibody dilution is as follows: cleaved-PARP (1 : 1000), caspase 3 (1 : 1000), cleaved-caspase 3 (1 : 500), cleaved-caspase 9 (1 : 500), BAX (1 : 1000), cytochrome c (1 : 1000), LC3B (1 : 500), SQSTM1 (1 : 1000), mTOR (1 : 1000), phospho-mTOR (1 : 1000), AMPK (1 : 1000), phospho-AMPK (1 : 1000), Beclin1 (1 : 1000), ULK1 (1 : 1000), LAMP2 (1 : 1000), LAMP1 (1 : 1000), and ACTB (1 : 1000). Anti-rabbit IgG was diluted at a ratio of 1 : 2000. Primary antibody was incubated overnight at 4°C, and secondary antibody was incubated for 1 hour.
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10

Western Blot Analysis of Protein Signaling

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Proteins were isolated using RIPA buffer (P0013B, Beyotime) with protease inhibitor (ST505, Beyotime) and phosphatase inhibitor (P1081, Beyotime), and the concentrations were measured using a bicinchoninic acid (BCA) kit (P0012S, Beyotime). Lysates (60 μg/lane) were separated by 12% SDS-PAGE gels and subsequently transferred to PVDF membranes. The membranes were blocked with 5% BSA for 1 hour at room temperature and subsequently incubated with corresponding antibodies as follows: GAPDH (1 : 1000, ab8245, Abcam), T-AKT (1 : 1000, 2920, CST), p-AKT (1 : 1000, 4060, CST), PTEN (1 : 1000, 9188, CST), MMP-9 (1 : 1000, 3852, CST), Vimentin (1 : 1000, 3932, CST), caspase 3 (1 : 1000, 14220, CST), cleaved caspase 3 (1 : 1000, 9664, CST), Bcl-2 (1 : 1000, 60178, Proteintech), or Bax (1 : 1000, 60267, Proteintech) at 4°C overnight. After incubation, the membranes were washed three times with 0.1% TBST and incubated with HRP-conjugated goat anti-mouse (BA1051, Boster) or goat anti-rabbit (BA1055, Boster) secondary antibody for 1 hour at room temperature; the signal was detected using enhanced chemiluminescence reagent (P0018S, Beyotime). The intensity of each band was measured using the Imaging J System (Bio-Rad, USA).
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