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19 protocols using b2064

1

Immunofluorescence Staining of Cell Proteins

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Immunofluorescence staining was performed as previously described [54 (link)]. HUVECs or EA.hy926 cells were seeded on coverslips were fixed with cold methanol for 15 min at room temperature and subsequently permeabilized with 0.1% Triton X-100 (Sigma-Aldrich, X100) and blocking buffer (3% BSA [Sigma-Aldrich, B2064] and 22.52 mg/ml glycine [Sigma-Aldrich, G8898] in PBS) for 1 h at room temperature. Then, cells were incubated with primary antibodies diluted in blocking buffer overnight at 4°C. After three washes with PBS, the cells were incubated with secondary antibodies and DAPI (Thermo Fisher, 62248) diluted in blocking solution for 1 h at room temperature. Cells were then washed three times with PBS, and the coverslips were sealed with nail polish. Fluorescence images were acquired using a Nikon A1R+/A1 Confocal Microscope (Nikon, Tokyo, Japan). The primary antibodies used in this study targeted endogenous LC3B (1:200; Cell Signaling Technology, 83506), FTH1(1:100, Abcam, ab75973) and ATP5B (1:100, Santa Cruz Biotechnology, sc-166462). The secondary antibodies were Donkey anti-Mouse IgG (H + L) Alexa Fluor 594 (1:1,000; Molecular Probes, A-21203) and Goat anti-Rabbit IgG (H + L) Highly Cross-Adsorbed Alexa Fluor Plus 488 (1:1,000; Molecular Probes, A-32731).
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2

Cardiomyocyte and Heart Tissue Immunostaining

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Heart section (5 µm) were subject to deparaffinization and rehydration followed by antigen retrieval by heating the slides in 10 mM Citrate buffer (pH 6.0) at 95 °C for 10 min. For cardiomyocytes, NRCMs cultured on glass coverslips were fixed in paraformaldehyde for 15 min at room temperature. After washing for three times with PBS each for 5 min, cardiomyocytes and heart sections were permeabilized with 0.5% (v/v) Triton X-100 for 20 min and then blocked with 5% (v/v) bovine serum albumin (BSA, Sigma-Aldrich, B2064) for 1 h at room temperature. Next, the samples were incubated primary antibodies of cTnT (Abcam, ab8295) or FGF20 (Santa Cruz sc-373927) at 4 °C overnight. After washing, samples for cTnT were incubated with Alexa fluor 647-conjugated anti-rabbit IgG secondary antibody (Abcam, ab150075), and samples for FGF20 were incubated with Alexa fluor 555-conjugated anti-mouse IgG secondary antibody (Abcam, ab150118). Finally, DAPI was used to label the cell nuclei. Images were acquired with a Leica SP8 confocal microscopy.
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3

Immunostaining of Decellularized Matrices

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The samples treated with or without decellularization were washed with PBS twice and fixed with 4% formaldehyde for 15 min. The samples were blocked with 2% BSA (B2064, Sigma, USA) in PBS for 30 min at room temperature, and were then incubated with anti-fibronectin (250,073, ZENBIO, CHN) and anti-laminin (384,832, ZENBIO, CHN) primary antibodies diluted 1:200 in PBS overnight at 4°C. Sequentially, the samples were incubated with goat anti-mouse/rabbit secondary antibody (BYE010/BYE019, Boyun, CHN) for 1 h at room temperature. After washed with PBS three times, the samples were counterstained with 4,6-diamidino-2-phenylindole (DAPI) (C0065, Solarbio, CHN) and imaged under a DM2500 fluorescent microscope (Leica, GER).
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4

Evaluating Oocyte Spindle Morphology

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The morphology of the oocyte spindles and chromosomes was evaluated by immunofluorescence staining. First, the MII oocytes were fixed in 4% PFA for 30 min at 4 °C. Then, oocytes were permeabilized in 5% Triton X-100 (X-100, Sigma-Aldrich) for 20 min and blocked in 3% (w/v) bovine serum albumin (BSA; B2064, Sigma-Aldrich) for 1 h at room temperature. Next, oocytes were incubated with monoclonal anti-β-tubulin antibody (SAB4200715, Sigma-Aldrich) (1:500 dilution) for 24 h at 4 °C. Then, the oocytes were incubated in Alexafluor 488 rabbit anti-mouse IgG (H + L) secondary antibody (A-11059, Invitrogen) (1:500 dilution) for 1 h at room temperature after washing three times with blocking solution (5 min each time). Then, the DNA was stained with 5.0 μg/mL Hoechst 33342 solution (C0030, Solarbio, China) for 20 min and washed three times with PBS (3 min each time). Finally, images of oocytes were taken by a confocal laser scanning microscope (C2 Plus, Nikon, Japan).
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5

Immunofluorescence Staining of Cells and Tissues

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Both cells and liver tissue sections were fixed with 4% paraformaldehyde for 15 minutes (P6148, Sigma–Aldrich), followed by permeabilization with 0.3% Triton X-100 (1139ML100, Biofroxx) for 5 minutes. After three PBS washes, the cells were blocked in 4% bovine serum albumin (BSA; B2064, Sigma–Aldrich), and the liver tissues were blocked with 5% goat serum (S9070, Solarbio) for 30 minutes. The samples were then incubated overnight with the target antibody at 4 °C. After another three PBS washes, the cells were treated with Alexa Fluor 488- or Alexa Fluor 568-conjugated secondary antibodies (A21202, A10042, A31573, Thermo Fisher Scientific) for 1 hour, followed by DAPI staining (D212, Dojindo). The primary antibodies used included anti-TXNIP (Huabio, ET1705-72, 1:200) and anti-Tomm20 (Santa Cruz Biotechnology, sc-17764, 1:200). Fluorescence images for every sample (200× magnification or 400× magnification) were captured using a fluorescence microscope (IX81-FV1000, Olympus). The antibodies used for immunofluorescence are listed in Table S2.
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6

Western Blot Analysis of NF-κB, Nrf2, and Lamin B1

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The protein samples were separated by SDS-PAGE and transferred to polyvinylidene fluoride membrane, followed by blockage with 5% bovine serum albumin (Sigma, B2064) in Tris-buffered saline (Sigma, T5030) containing 0.1% Tween 20 (Sigma, 93773) (TBST). The membranes were then incubated with primary antibodies at 4°C overnight. The primary antibodies included anti-NF-κB p65 (Abcam, ab16502), anti-Nrf2 (Abcam, ab31163), anti-GAPDH (glycer-aldehyde-3-phosphate dehydrogenase) (Abcam, ab9485), and anti-Lamin B1 (Proteintech, 66095-1-Ig) antibodies. After three washes with TBST, the membranes were incubated with HRP-goat-anti-rabbit (Abcam, ab6721) or HRP-goat-anti-mouse (Abcam, ab6789) secondary antibodies at room temperature for 1 h, followed by visualization using an enhanced chemiluminescence (ECL) system (Thermo Scientific, 32132). The images of protein bands were photographed using a ChemiDoc MP device (Bio-Rad, Hercules, CA, USA) and analyzed using ImageJ software.
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7

Immunohistochemical Analysis of NRP1 Expression

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The expression of NRP1 in human patients and mouse tumour tissues were examined by immunohistochemistry. The samples were fixed with 4% paraformaldehyde at room temperature overnight, dehydrated and embedded in paraffin, and cut into 5-mm thick sections. The sections were incubated at 60°C for 4 h, dewaxed using xylene and rehydrated using a decreasing ethanol gradient (100, 95, 75 and 50%, 5 min each time). After washed three times for 5 min with PBS, sections were incubated in 3% hydrogen peroxide at room temperature for 10 min to inactivate endogenous peroxidase. Sections were heated at 95°C for 20 min in EDTA bufer and natural fall to room warm. The sections were blocked in 5% BSA (B2064; Sigma-Aldrich; Merck KGaA) and 0.3% Triton X-100 (T8200; Solarbio) for 30 min. Tissues were incubated with rabbit monoclonal human primary antibody (1:200; cat. no. ab81321; Abcam) overnight at 4°C and goat anti-rabbit IgG H&L (Alexa Fluor® 647) antibody (1:200; cat. no. ab150079; Abcam) for 2 h at room temperature in dark. The sections were stained in 50 µl DAPI solution and incubated in dark for 10 min at room temperature. For each slice, images of five sections were acquired under using a light microscopy and analysed using cellSens Standard 1.18 (Olympus Corporation).
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8

Immunofluorescence Staining of Cultured Cells

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After specific treatment, cultured cells grown on 96‐well plate were washed with PBS twice and incubated with 4% paraformaldehyde (P6148, Sigma‐Aldrich, St. Louis, USA) for 20 min. Then, the cells were permeabilized with the treatment of 0.1% Triton X‐100 in PBS for 10 min at 4 °C and blocked with 4% bovine serum albumin (B2064, Sigma‐Aldrich, St. Louis, USA) in PBS for 0.5 h at 37 °C. The primary antibody was added and incubated with the cells at 4 °C overnight. At the end of incubation, the primary antibody was removed and the cells were washed with PBS. Then cells were incubated with Alexa Fluor 488‐ or Alexa Fluor 568‐conjugated secondary antibodies (A11008, A10037; 1:100, Thermo Fisher Scientific, Waltham, USA) at room temperature for 1 h. Nuclei were stained with DAPI for 5 min and then imaged with a fluorescence microscope (IX81‐FV1000, Olympus, Tokyo, Japan). The following primary antibodies were used: anti‐Bcl‐XL (ET1603‐28, Huabio, Hangzhou, China), anti‐USP13 (sc‐514416, Santa Cruz Biotechnology, Dallas, USA).
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9

Immunohistochemical Analysis of Pancreatic Markers

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Tissue sections were washed with phosphate buffered saline (PBS) for 5 min, deactivated in H2O2 (10 min), washed with distilled water 3 times, fixed with EDTA and blocked with 5% bovine serum albumin (B2064; Sigma-Aldrich; Merck KGaA) at room temperature for 1 h. Tissue sections were incubated with primary antibodies anti-insulin (#I2018), anti-glucagon (G2654), anti-NF-κB (17–10060), anti-nerve growth factor (NGF; N3279) and anti-myelin basic protein (MBP; AMAB91062; all Sigma-Aldrich; Merck KGaA; all 1:300) at 25°C for 60 min. Following washing with PBS, sections were incubated with the secondary antibody (M8770; Sigma-Aldrich Merck KGaA; 1:300) at 25°C for 45 min, stained with 3,3′-diaminobenzidine (Dako REAL EnVision Detection System; Agilent Technologies, Inc., Santa Clara, CA, USA) for 30 sec, counterstained with hematoxylin for 12 min at room temperature, dehydrated with a gradient alcohol series and mounted with neutral gum under light microscopy (magnification, ×400).
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10

Immunofluorescence Staining of Oocytes

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Oocytes were fixed for 30 min in PBS containing 2% formaldehyde and 0.05% Triton X-100 and then permeabilized in 0.5% Triton X-100 for 20 min at room temperature. Oocytes were incubated at 4 °C overnight in a blocking buffer with 3% bovine serum albumin (B2064, Sigma-Aldrich) in PBS supplemented with 0.1% Tween-20 and 0.01% Triton X-100. Oocytes were incubated at 37 °C with following primary antibodies: anti-β-tubulin antibody (1:200 dilution, ab11309, Abcam), anti-FLAG antibody (1:50 dilution, ab245893, Abcam), anti-centromere antibody (ACA) (1:500 dilution; HCT-0100, ImmunoVision), anti-HEC1 phospho Ser55 antibody (1:200 dilution, GTX70017, GeneTex), anti-BUBR1 antibody (1:100 dilution, 612502, BD Biosciences), and anti-KIF11 antibody (1:200 dilution, HPA010568, Sigma-Aldrich). After washing, oocytes were incubated at 37 °C for 1 h with appropriate secondary antibodies as follows: goat anti-human Alexa Fluor 488 (1:500 dilution, 52526, Sigma-Aldrich), goat anti-rabbit Cy3 (1:500 dilution, AS007, ABclonal), and goat anti-rabbit Alexa Fluor 647 (1:500 dilution, AS060, ABclonal). DNA was counterstained with Hoechst (5 μg/mL, 1:1000 dilution, HY-15559A, MCE) for 10 min at room temperature before imaging. Finally, the oocytes were mounted on a 35-mm glass-bottom dish (801001, NEST) and images were captured using a confocal laser-scanning microscope (Leica SP8 or ZEISS LSM 880).
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