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13 protocols using pdl 800 b

1

Time-Resolved Fluorescence of NADH-Enzyme Complexes

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In this system, the excitation pulse centered at 340 nm (with 10 MHz repetition) was generated by a picosecond pulsed diode laser (PDL 800-B, PicoQuant). The fluorescence was recorded using a time-correlated single photon counting module (PicoHarp 300, PicoQuant) and a single photon counting PMT (PMA165A-N-M, PicoQuant). The instrument response function was found to be ~440 ps in width by measuring the Rayleigh scattering of excitation pulses in a suspension of 0.34 wt% SiO2 nanoparticles in water. More details about the system can be found elsewhere.34 For constructing decay associated spectra (DAS), the fluorescence was scanned (in the range 420–560 nm for NADH–MDH and 420–500 nm for NADH–LDH) with 10 nm bandwidth and analyzed by a global fitting technique35 using a biexponential model. The fits in this work usually yielded x2 values of 1.01–1.15.
Steady-state absorption spectra were measured with a UV–visible spectrophotometer (TU1901, Beijing Purkinje General Instrument Co. Ltd.). Steady-state fluorescence spectra were recorded using a commercial spectrofluorometer (FluoroMax-4, Horiba). The decay associated spectra were normalized to the steady-state spectra of NADH–MDH/LDH in Tris–HCl buffers.
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2

Intracellular Temperature Imaging with FLIM

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For intracellular temperature imaging, the temperature of the microscope stage was regulated using an INUB-F1 controller (Tokai Hit, Shizuoka, Japan), and the temperature of the medium was monitored using a thermocouple probe (TSU-0125 thermometer equipped with a TSU-7225 probe, Tokai Hit). A TCS-SP5 confocal laser-scanning microscope (Leica) equipped with a 405 laser (PDL 800-B, PicoQuant, Berlin, Germany) and TCSPC module SPC-830 (Becker & Hickl, Berlin, Germany) was used for FLIM analysis. The pulse repetition rate of 405 laser was set at 20 MHz. The fluorescence was captured through an HCX PL APO Ibd.BL 63× 1.4 N.A. oil objective (Leica) with zoom factor ranging from 1 to 10 in 64×64 pixel format at 400 Hz scanning speed (scanning duration was set for 60 seconds) through bandpass 500–700 nm for cells loaded with FPT only, and 500–550 nm for cells co-stained with MitoTracker Deep Red FM. The laser power, sensitivity of the detector, and pinhole size were controlled so that the photon count rate does not exceed 2% of pulse count rate (2×107). The obtained fluorescence decay curve in each pixel was fitted with a double exponential function using SPCImage software (Becker & Hickl) after the binning procedure (factor: from 2 to 6).
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3

Comprehensive Characterization of Synthesized Product

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Optical microscopy (Olympus BX53, integrated into the Raman spectrometer) and scanning electron microscopy (SEM, FEI Nova nanoSEM-450) were used to characterize the size and morphology of as-synthesized product. The chemical composition analysis was carried out using the energy-dispersive spectrometry (EDS, Oxford X-max 20, attached on the SEM). Powder X-ray diffraction (PXRD) measurement was performed at room temperature by Bruker D8 Discover diffractometer to determine the crystallographic phase structure. The steady-state PL spectra of individual microsheet were obtained using a high-resolution Raman spectrometer (LabRAM HR Evolution, Horiba JY) with 532 and 355 nm continuous wave (CW) lasers as excitation light sources. Here, the laser power is 0.2 mW and numerical aperture (NA) of the object is 0.8. The diameter of light spot equals to 1.22 λ/NA. The back scattered PL was collected. Liquid nitrogen cryogenic platform (Linkam THMS 600) was used for the temperature-dependent measurement. The time-resolved PL (TRPL) was collected by the time-correlated single-photon counting (TCSPC) system (PicoQuant GmbH, Picoharp 300) with a picosecond pulsed laser diode (Picoquant PDL 800-B, λ = 375 nm, 10–80 MHz) as the excitation source.
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4

Perovskite Photoluminescence Characterization

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The temperature-dependent steady-state photoluminescence (PL) spectra of perovskite films were measured by using a monochromator (SP-2150i, Acton), a photomultiplier tube (PMT, Acton PD471) and pulsed diode-laser head (LDH-P-C-405, PicoQuant) system. The temperature was varied from 60 K to 200 K. The time-resolved PL (TR-PL) of perovskite films was monitored at 775 nm by using a TCSPC module (PicoHarp 260, PicoQuant) with a micro channel plate photomultiplier tube (MCP-PMT, R3809U-50, Hamamatsu), a 400 nm picosecond pulsed laser (LDH-P-C-405, PicoQuant) coupled with laser-diode driver (PDL 800-B, PicoQuant).
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5

Characterizing Core-Shell Nanostructures

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The morphology of core-shell nanostructures was investigated using TEM (JEOL JSM2100-F) at 100 kV. A Perkin Elmer LS 55 fluorescence spectrometer was used to obtain the MEF and FRET-induced changes in photoluminescence spectra of the prepared samples. Time-resolved fluorescence spectra were measured using a Picoquant LDH-P-C-440M & PDL800-B at 20 MHz. The light source was a picosecond diode laser operating at a wavelength of 442 nm. The obtained decay curves were studied using FluoFit software (Picoquant). The excitation wavelength used for all of the PL measurements was 450 nm, which corresponds to the wavelength of the absorption maximum of CdSe QDs. Confocal images were taken using a confocal laser scanning microscope (CLSM LSM510, Carl Zeiss) with 480 nm excitation and 520 nm emission filters.
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6

Photoluminescence Spectroscopy and Lifetime Dynamics

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The photoluminescence spectra were measured using a pulsed diode laser (Picoquant, PDL 800-B, center wavelength of 374 nm, 70 ps, 2.5 MHz), then these spectra were collected by a Horiba Jobin Yvon TRIAX 320 spectrometer. The lifetime measurement was carried out by a time corrected single photon counting (Pico Harp 300) system with the time resolution of 36 ps. All the photoluminescence dynamics were performed at room temperature.
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7

Cy3 Fluorescence Lifetime Measurement by TCSPC

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The fluorescence lifetime of Cy3 was measured using a TCSPC system (PicoQuant) with a TCS SP8 confocal laser‐scanning microscope (Leica Microsystems) at room temperature. The fluorescently labeled Cas9 constructs (1 μM) were loaded in a glass chamber prepared by the same procedure for smFRET measurements and absorbed onto the glass surface via Neutravidin. The buffer condition was same as that of smFRET measurement: 20 mM HEPES‐KOH, pH 7.5, 100 mM KCl, 2 mM MgCl2, 0.5 mM EGTA, 1 mM DTT, 2.5 mM TSY, 2.5 mM PCA, and 2% PCD. The Cas9 constructs on the glass surface were illuminated with a pulsed diode laser (PDL 800‐B, PicoQuant, 470 nm) through a confocal pinhole (hole size: 1 Airy unit = 0.896 μm) at a repetition rate of 20 MHz. The emission light in a range of 540–660 nm was collected through an HCX PL APO Ibd.BL 63× 1.4 NA oil objective (Leica Microsystems) in a 128 × 128 pixel format. The fluorescence lifetime data were collected on a time scale of 50 ns, resolved into 3,200 channels (i.e., 15.6 ps for each channel), and accumulated for 30 s. The data of each pixel were averaged within the whole image and then fitted with double exponential decay curves using the OriginPro 8.0J software (OriginLab). Mean lifetime (τmean) was calculated as τmean=(A1τ12+A2τ22)/(A1τ1+A2τ2) where τ and A were lifetime and amplitude, respectively.
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8

Time-Resolved Fluorescence Analysis of NADH

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In this system, a picosecond pulsed diode laser (PDL 800-B, PicoQuant) was used to produce the excitation pulse centered at 340 nm with a repetition of 10 MHz. The fluorescence was recorded by a stand-alone time correlated single photon counting (TCSPC) module (PicoHarp 300, PicoQuant) and a single photon counting photomultiplier (PMA165A-N-M, PicoQuant). The IRF was measured to be about 440 ps by detecting the Rayleigh scattering of excitation light from 0.34 wt% SiO2 nanoparticles in water. The details of this system have been reported previously [19 (link)–21 ]. Lifetime components were obtained by fitting the decay data to a multiple-exponential decay model. Goodness of fit was evaluated by the χR2 functions [22 (link)] (The fits yield values of 1. 01 – 1.3 in this work). For decay associated spectra (DAS), the fluorescence was scanned from 420 nm to 560 nm with 10 nm bandwidth and all the experimental decay profiles were analyzed by global fitting [23 ].
Steady state absorption and fluorescence were measured with a UV-Vis spectrophotometer (TU1901, Beijing Purkinje General Instrument Co. Ltd.) and a commercial spectrofluorometer (FluoroMax-4, Horiba), respectively. The DAS and TRES were normalized to these technical steady state spectra of NADH in Tris-buffered solution.
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9

Spectroscopic Analysis of Nanomaterials

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The PL measurements were
performed by a pulse diode laser (PicoQuant, PDL 800-B, a center wavelength
of 374 nm, 70 ps, 2.5 MHz) through the lens to focus with a 5 μm2 spot size at 90° incident angle using a HORIBA Jobin
Yvon TRIAX 320 spectrometer to collect the signals. The lasing spectrum
and carrier lifetime were measured by a HORIBA Jobin Yvon TRIAX 320
spectrometer in which 374 nm pulsed laser was used as the pumping
source. The SEM images were measured by a JEOL JSM-6500F field-emission
scanning electron microscope under the acceleration voltage of 7 kV,
working distance of 7.8 nm, and ×11,000. Before measuring, a
thin gold layer on the sample was sputtered by using a fine gold coater
(EMI TECH K55 0X) for 1 min under 5 mA applied current to avoid the
charging effect.
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10

Absorption and Fluorescence Spectroscopy Protocol

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Absorption spectra of the samples were recorded from solutions in 1-cm quartz cuvettes on a Varian Cary 4000 UV/Vis spectrophotometer or a Jasco UV–Vis spectrophotometer (model V-650). Steady-state fluorescence spectra were recorded by using a Varian Eclipse or a Hitachi F-4500 fluorometer. The fluorescence lifetime measurements at room temperature were performed by time-correlated single-photon-counting (TCSPC) on an FLS-920 fluorometer (Edinburgh instrument) incorporating a pulsed diode laser (PDL 800-B from Picoquant, λex = 373 nm, FWHM ca. 50 ps) suitable for lifetime measurements down to 300 ps. The fluorescence decays could be satisfactorily fitted (χ2 < 1.05) by using mono/bi-exponential decay functions.
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