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13 protocols using slc7a11

1

Neuronal Proteome Analysis of Exosome Subtypes

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Protein extraction of neuronal cells in the control, M0-Exosome, and M1-Exosome groups was carried out using RIPA (Beyotime, Shanghai, China). Protein concentration was determined using a BCA assay kit (Beyotime, Shanghai, China) according to the manufacturer’s instructions. For each group, protein (20 μg/lane) was loaded and separated by 12% SDS-PAGE (Bio-Rad Laboratories, Hercules, CA, USA). The separated proteins were then transferred to PVDF membranes with a current of 300 mA for 80 min, blocked using 3% bovine serum albumin (Beyotime, Shanghai, China) for 2 h, and incubated overnight with primary antibodies against GPX4 (1:1000; Abcam), SLC7A11 (1:1000; ABclonal), FTH1 (1:1000; ABclonal), and β-actin (1:5000; ABclonal). Subsequently, the membranes were washed three times in TBST and incubated in HRP-conjugated secondary antibody (1:4000; goat anti-rabbit IgG, ABclonal) for 1 h. The membranes were once again washed in TBST. The protein bands were then exposed to the ECL reagent (Beyotime, Shanghai, China) and visualized using a chemiluminescent detector (Tanon Science and Technology Co., Ltd.). The relative protein expression was quantified using ImageJ software (National Institutes of Health) with β-actin as the control.
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2

Western Blot Analysis of Liver Proteins

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The liver tissue or cells were prepared to homogenate with cooled PIRA lysate. After centrifugation, the supernatant was collected and the total protein concentration was measured. The 30 μg proteins were separated by SDS-PAGE electrophoresis, and transferred to polyvinylidene fluoride (PVDF) membranes. The blots were incubated with 5% skimmed milk. After washed with TBST, the blots were incubated with primary antibody of Collagen I (Servicebio, GB112543), Collagen III (Servicebio, GB11023), NADPH Oxidase 4 (NOX4, Boster, A00403), 4-Hydroxynonenal (4-HNE, Arigo, ARG23717), Transferrin Receptor 1 (TfR1, Invitrogen, 13–6800), Divalent Metal Transporter 1 (DMT1, Absin, abs112967), Ferroportin 1 (FPN1, Alpha Diagnostic International, MTP11-A), Glutathione Peroxidase 4 (GPX4, Huabio, ET1706-45), the glutamate/cystine antiporter solute carrier family 7 member 11 (SLC7A11, Abclonal, A2413), Nuclear Factor Erythroid 2-Related Factor 2 (Nrf2, Servicebio, GB11962), Heme Oxygenase-1 (HO-1, Servicebio, GB12104), GAPDH (Servicebio, GB15002), α-Tubulin (GeneTex, GTX628802) overnight at 4°C. The second day, blots were incubated with HRP-conjugated secondary antibodies at room temperature. Finally, enhanced chemiluminescent (ECL) method and Image J software were respectively used to detect the immunoreactive protein and analyze the mean gray value.
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3

Liver Protein Expression Analysis

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Western blot analysis was conducted according to a previous study [41 (link)]. The weighed liver samples were added to an equal proportion of RIPA lysis buffer (Beyotime Biotechnology, Shanghai, China), and the supernatant was obtained after ultrasonic crushing and centrifugation. A BCA kit (Beyotime Biotechnology, Shanghai, China) was used for protein concentration measurement. Then, protein samples were separated by SDS-PAGE, transferred to a membrane, and sealed. The membrane was incubated with a specific primary antibody of PTGS2, ACSL4, or SLC7A11 (Abclonal, Wuhan, China) or GAPDH (Cell Signaling Technology, Danvers, MA, USA) at 4 °C overnight. Fluorescent signals were detected with an imager (Chemidoc-MP imaging system, BioRad, Hercules, CA, USA), and the protein quantification results were generated by Image J 1.53a software (National Institutes of Health, Bethesda, MD, USA).
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4

Bromophenol Compound XK-81 Bioactivity Assay

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The novel marine bromophenol compound, XK-81 (Purity ≥ 98%), was supported by the Institute of Oceanology of the Chinese Academy of Sciences (Qingdao, China). Roswell Park Memorial Institute 1640 (RPMI1640), Dulbecco’s modified Eagle’s medium (DMEM), and fetal bovine serum (FBS) were purchased from Life Technologies/Gibco Laboratories (Grand Island, NY, USA); erythrocyte lysis buffer was purchased from Gefan Biotechnology (Shanghai Gefan Biotechnology, Shanghai, China); the Mito-FerroGreen kit was purchased from Dojindo (Kumamoto, Japan); C11 BODIPY 581/591 were purchased from Invitrogen (Camarillo, CA, USA); an immunohistochemistry detection system kit was bought from Bioss (Beijing, China); antibodies for GAPDH, CD80, CD206, GPX4, SLC7A11, and ACSL4 were purchased from ABclonal Technology (Wuhan, China). ELISA kits for IL-12, IL-1β, TNF-α, and IFN-γ were obtained from Nanjing Jiancheng Bioengineering Research Institute (Nanjing, China); all other chemicals were purchased from Sigma Aldrich (St. Louis, MI, USA).
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5

Protein Expression Analysis in MLE-12 Cells

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Total protein of MLE-12 cells or the lung tissues were lysed and extracted using RIPA lysis buffer containing a protease inhibitor, a phosphatase inhibitor, and Phenylmethanesulfonyl fluoride (Beyotime, Shanghai, China). Protein concentrations were quantified using the BCA protein assay kit (Thermo Scientific, Rockford, Ill). The target proteins were separated by 12% SDS-PAGE and transferred to PVDF membranes (Millipore, Billerica, Mass). Furthermore, the PVDF membranes were blocked with 5% Bovine Serum Albumin (BSA) for 1h at room temperature and incubated overnight at 4°C with primary antibodies against α7nAchR (1:1000, Abcam), GPX4(1:1000, Abcam), SLC7A11(1:1000, ABclonal, Wuhan, China), FTH1(1:1000, Cell Signaling Technology), β-actin (1:1000, Cell Signaling Technology). The membranes were washed 3 times with TBST and then incubated with secondary antibody (1:5000, anti-rabbit IgG, Cell Signaling Technology) for 1h. The target proteins were measured using the enhanced chemiluminescence (Thermo Scientific, USA) and western blotting assay system (Bio-Rad, USA). In addition, the relative protein expression was calculated by using Quantity One software (Bio-Rad, USA).
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6

Ferroptosis Induction and Measurement

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P53 and α-tubulin antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). ACSL4, SLC7A11, and NOX2 antibodies were purchased from Abclonal (Wuhan, China). Horseradish peroxidase (HRP)-conjugated IgG (H + L) secondary antibodies and CellROX Green Reagent were purchased from Thermo Scientific (Waltham, MA, USA). The Gpx4 antibody was obtained from Abcam (Cambridge, MA, USA). The Cytotox 96 nonradioactive cytotoxicity assay kit was purchased from Promega (Fitchburg, USA). Erastin was purchased from MCE (New York, NY, USA). The Lipid Peroxidation (MDA) Assay Kit, and GSSG/GSH quantification kits were purchased from Beyotime (Shanghai, China). Hoechst 33342 and one-step RT-qPCR kits were purchased from Sangon Biotech (Shanghai, China). Ferrostatin-1 (Fer-1) was purchased from Solarbio Science & Technology (Beijing, China). Precast Gel was purchased from Tsingke Biotechnology (Beijing, China). ChamQ Universal SYBR qPCR master mix was purchased from Vazyme Biotech (Nanjing, China). FerroOrange was purchased from Dojindo Molecular Technology (Kyushu, Japan). Gentamicin and other chemicals were from Sangon Biotech (Shanghai, China). All drug concentrations are expressed as the final molar concentration in working buffer.
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7

Ferroptosis Mechanism in Rabbit Cells

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Rabbit anti-NRF2 (Cat# ab62352), Alexa Fluor 488 anti-rabbit secondary antibody (Cat# ab150077), and iron assay kit (Cat# ab83366) were from Abcam (UK). Anti-LC3B (Cat# 2775) and anti-p62 (Cat# 39749) antibodies were from CST (USA). GPX4 (Cat# A1933), SLC7A11 (Cat# A15604), CD68 (Cat# A13286), GAPDH (Cat# AC002), and β-actin (Cat# AC026) antibodies and C11-BODIPY (Cat# RM02821) were from ABclonal (Wuhan, China). Phorbol 12-myristate 13-acetate (PMA) (Cat# 16561-29-8), UA (Cat# 69-93-2), and RAPA (Cat# 53123-88-9) were from Sigma (USA). Fer-1 (Cat# HY-100579) and TBHQ (Cat# HY-100489) were from MCE (USA). Human oxLDL (Cat# YB-002) was from Yiyuan Biotechnologies (Guangzhou, China).
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8

Immunostaining and Western Blotting Antibodies

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The following antibodies were used for immunofluorescence staining and Western blotting: rabbit polyclonal antibodies against CHOP (#A0854, 1 : 1000 dilution, ABclonal, MA, USA), p-JNK (#AP0808, 1 : 1000 dilution, ABclonal, MA, USA), JNK (#A4867, 1 : 1000 dilution, ABclonal, MA, USA), CTGF (#A11456, 1 : 1000 dilution, ABclonal, MA, USA), α-SMA (#A1011, 1 : 1000 dilution, ABclonal, MA, USA), integrin-β1 (#A11060, 1 : 1000 dilution, ABclonal, MA, USA), GPX4 (#A1933, 1 : 1000 dilution, ABclonal, MA, USA), SLC7A11 (#A13685, 1 : 1000 dilution, ABclonal, MA, USA), and β-actin (#AC026, 1 : 5000 dilution, ABclonal, MA, USA).
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9

Western Blot Analysis of Cellular Proteins

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Cells were collected and lysed with RIPA lysis buffer. Proteins were separated by SDS‒PAGE and then transferred to PVDF membranes. After being blocked with 5% nonfat milk, the membrane was incubated with primary antibodies [collagen II, MMP-13, aggrecan (ACAN), FTH1, TFR1, p53, GPX4, GAPDH (Abcam, Cambridge, UK), and SLC7A11 (ABclonal, Wuhan, China)] overnight at 4 °C and with secondary antibodies for 2 h at room temperature. The protein bands were photographed using the BioSpectrum Imaging System (UVP, USA). The optical density of the protein bands was quantified by ImageJ software.
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10

Oxidative Stress Measurement Techniques

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The SLC7A11, GPx4, ACSL4, COX2 and GAPDH primary antibodies and the HRP conjugated anti-rabbit IgG secondary antibody were purchased from ABclonal Technology (Wuhan, China). Acridine orange (AO) dye was purchased from Solarbio, (Beijing, China). C11-BODIPY581/591 was purchased from Thermo Fisher Scientific (MA, USA). FerroOrange, Mito-FerroGreen and LiperFluo were purchased from Dojindo Molecular Technology (Japan). MitoTEMPO were purchased from Sigma (MO, USA). 2′,7′-dichlorodihydrouorescein diacetate (DCFH-DA), Mito-Tracker Red, GSH/GSSG assay kit and Lipid Peroxidation MDA Assay Kit were purchased from Beyotime Biotechnology (Shanghai, China). Cell Counting Kit 8, Annexin V-FITC/propidium iodide assay kit, MitoSOX™ Red Mitochondrial Superoxide Indicator and Mito-Tracker Green were purchased from Yeasen Biotechnology (Shanghai, China). Ferrostain-1, Deferoxamine mesylate (DFO) and Trolox were purchased from APExBIO (TX, USA).
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