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8 protocols using h0887

1

Colorimetric Lead Ion Sensing Protocol

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To assess the sensitivity of the color response to lead ion concentrations, serial dilutions of Pb(NO3)2 were prepared in 10mM HEPES (Sigma-Aldrich, H0887) in the range of 1 M to 10−8 M. The pH of the HEPES stock used for this test was 7.5, higher than 7.1, as discussed elsewhere, and was due to lot variability in the commercial HEPES solution (Sigma-Aldrich, H0887), which was reported to be between pH 7.0 to 7.6. As described above, the paper substrate was prepared by spraying with the dipicolylamine-terminated diacetylene-containing amphiphile dissolved at 20 mg/mL in ethanol and with a 30 s UV curing time using an 8 W 254 nm hand lamp. Strips cut from the coated paper were partially submerged for 5 min in the respective dilutions, as well as a control of 10mM HEPES without lead. Experiments were carried out in triplicate and the color response determined based on the CIELab (a*, b*) values as described above.
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2

Whole-mount Immunogold Labeling for TEM

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Whole-mount primary antibody labeling was performed as described above. After overnight incubation at 4°C with a rabbit pAb anti-laminin antibody (ab11575, Abcam), organoids were washed with PBS-Triton and incubated overnight at 4°C with a goat anti-rabbit IgG labeled with 10 nm gold (ab39601, Abcam) diluted 1:400. Samples were then fixed with 4% paraformaldehyde and 2.5% (wt/vol) glutaraldehyde (Agar Scientific, UK) in 0.1 M HEPES (H0887, Sigma-Aldrich) pH 7.2, and postfixed with 1% osmium tetroxide (R1024, Agar Scientific) and 1.5% potassium ferrocyanide (214022, The British Drug House, Laboratory Chemicals Division) in 0.1 M cacodylate buffer (R1102, Agar Scientific) pH 7.2 for 1 hr, then with 1% uranyl acetate (R1100A, Agar Scientific) in water for overnight. Samples were dehydrated, embedded with low-viscosity medium-grade resin (T262, TAAB Laboratories Equipment Ltd) and polymerized for 24 hr at 60°C. For transmission electron microscopy, sections were cut with a Reichert Ultracut ultramicrotome and observed with a FEI Tecnai 12 Biotwin microscope at 80 kV accelerating voltage equipped with a Gatan Orius SC1000 CCD camera.
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3

Isolation and Sorting of Adipose Macrophages

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Mouse eWAT or scWAT were isolated and cleaned with PBS (D8537, Sigma-Aldrich) to remove impurities and blood. The tissues were cut and minced into small pieces approximately 1.0 mm3 and subsequently digested with digestion buffer containing PBS, 1% HEPES (H0887, Sigma-Aldrich), and 0.2% collagenase type II (C6885, Sigma-Aldrich) at 37 °C with shaking at 150 rpm for 20 min. An equal volume of complete culture medium was added and the solution mixed to halt the digestion. The digested solution was filtered through a 100 μM nylon (Falcon) mesh and centrifuged at 1200 × g for 10 min. The SVF pellets were collected and resuspended in lysing buffer (555899, BD Pharmingen) to lyse red blood cells before further analysis. Anti-F4/80 MicroBeads (130-110-443, MiltenyiBiotec) was used for sorting F4/80+ macrophages from SVFs.
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4

Culturing MIN6 Cells for Diabetes Research

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The MIN6 cells (passage 5–25; mycoplasma negative) (kindly provided by Endocrinology, Diabetes and Nutrition Unit, University of Louvain, Ottignies-Louvain-la-Neuve, Belgium) were cultured in DMEM supplemented with 10% fetal bovine serum (FBS) (Gibco, A3161002C, Rockville, MD, USA), 10 mM of HEPES (Sigma, H0887, Saint Louis, MI, USA), and 1% P/S at 37 °C, 5% CO2.
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5

Lipid Droplet Biogenesis Induction

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U2-OS cells and Hela cells were cultured in DMEM (D5796; Sigma-Aldrich) supplemented with 10% fetal bovine serum (F4135; Sigma-Aldrich), 1% penicillin streptomycin solution (30-002-Cl; Corning), and 25 mM HEPES (H0887; Sigma-Aldrich). The cells were passaged at 80–90% confluency with 0.25% trypsin-EDTA (25-053-Cl; Corning). Cells were treated with 600 μM of OA conjugated with 100 μM of FA-free BSA (A8806; Sigma-Aldrich) for 16 h to induce TG-rich LD biogenesis. To promote SE-rich LD biogenesis, cells were treated with 200 μM of cholesterol conjugated with methyl-β-cyclodextrin (C4555; Sigma-Aldrich) for 16 h. OA and CHOL were added to DMEM supplemented with 25 mM HEPES.
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6

Culture and Maintenance of Glioblastoma Cell Lines

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U87 and U251 glioblastoma cell lines (identity of cell lines was verified by karyotyping and STR profiling) were obtained from ECACC and were cultured in DMEM cell medium (DMEM-HA, Capricorn Scientific, Ebsdorfergrund, Germany) supplemented with 10% fetal bovine serum (FBS) (S0615, Sigma, Dreieich, Germany), 1% penicillin/streptomycin (2321115, Gibco, Carlsbad, CA, USA), 1% Non-essential amino acids (NEAA) (11140050, Gibco, Carlsbad, USA) and 1% Sodium pyruvate (NPY-B, Capricorn Scientific, Ebsdorfergrund, Germany). Glioblastoma stem-like cells were isolated as described previously [12 (link)]. Cells were cultured in DMEM/F12 medium (DMEM-12-A, Capricorn Scientific, Ebsdorfergrund, Germany) including 2% B27 supplement (117504044, Gibco, Carlsbad, USA), 1% amphotericin (152290026, Gibco, Carlsbad, USA), 0.5% HEPES (H0887, Sigma, Dreieich, Germany) and 0.1% gentamycin (A2712, Biochrom, Berlin, Germany) with EGF (100-18B, Peprotech, Hamburg, Germany) and bFGF (315-09, Peprotech, Hamburg, Germany) in a concentration of 20 ng/mL, respectively. All cells were incubated at 37 °C under 5% CO2 humidified incubator.
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7

Splenocyte Proliferation Assay for EAE

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Splenocyte suspensions were prepared by grinding spleens of EAE mice through a 70-μm nylon cell strainer at 34 dpi. Splenocytes were seeded at 2 × 105 cells per well in X-VIVOTM 15 medium (BE02-060F, Lonza, Basel, Switzerland) supplemented with 1% v/v L-glutamine (X0550, Biowest, Nuaillé, France), 0.4% v/v penicillin-streptomycin (L0022, Biowest), 0.1 M HEPES (H0887, Sigma-Aldrich), and 6 μM 2-β-mercaptoethanol (M3148, Sigma-Aldrich) within 96-well plates. Splenocyte cultures were stimulated with 5 μg/mL MOG35–55 or 5 μg/mL phytohaemagglutinin-L (PHA-L, L2769, Sigma-Aldrich) and compared to non-stimulated (control) condition. After 54 h in vitro, 75 μL of supernatant were harvested and stored at −80 °C to further assess cytokine secretion. At the same time, cell cultures were again supplemented with completed medium containing 1 μCi of [3H]-thymidine per well (NET027Z, PerkinElmer, Waltham, MA, USA). Splenocyte cultures were maintained under the same conditions for an additional 18 h, and incorporated radioactivity was measured in a beta-scintillation counter (Wallac, Turku, Finland). Five replicates per condition (control, MOG35–55, and PHA-L) and mouse were analysed and the results are shown as the stimulation index. Stimulation indices were calculated by dividing the mean counts per minute (cpm) of MOG35–55 or PHA-L condition by the mean cpm of the control condition.
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8

Negative Staining of Biological Samples

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Ten μl of sample was incubated at RT on a 200 mesh formvar/carbon grid. Grids were then washed 5 x 1 min in 200 mM HEPES (Sigma-Aldrich H0887) and transferred to 20 μl 1% Uranyl acetate, (UA) (Agar scientific AGR1260A) and incubated for 1 min at RT. Excess 1% UA was removed and the grids were left to dry before imaging. Images were acquired using a 120 kV Tecnai G2 Spirit BioTwin (FEI company) with an Orius CCD camera (Gatan Inc.)
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