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13 protocols using ab133112

1

Inflammation and Apoptosis Markers Assay

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Inflammation markers including TNF-α (ab46070), IL-1β (ab100768), IL-6 (ab100772), IL-10 (ab133112), and ICAM-1 (CD54) (ab100763) ELISA kits were obtained from Abcam Co., Eugene, OR, USA. As for the apoptotic signaling markers, cleaved caspase-3 (KHO1091) was purchased from Thermo Fisher Scientific Inc. Waltham, MA, USA, and caspase-9 (LS-F4141) was acquired from Biocompare, San Francisco, CA, USA. These markers were measured according to the manufacturer’s instructions using a SpectraMax i3X (Molecular devices San Jose, CA, USA) microplate reader.
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2

Cytokine and Transcription Factor Analysis

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Control, stress and DM preconditioned culture media was collected and stored at −40°C before use. NF-κB (P65) transcription factor ELISA (Abcam cat # ab133112) was performed on nuclear extracts instead of media. Collected media was used in triplicate. Cytokine concentrations were measured to further confirm the protective potential of DM extract. Collected media was subjected to ELISA for IL1β (Abcam cat # ab46052), TNF-α (Abcam cat # ab181421), IKKα and IKKβ (Cytoglow cat # CB5358) according to manufacturer’s protocol.
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3

Transcriptional Factor Activation Assay

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The transcriptional activities of Stat1 (Abcam, ab207228), p65 (Abcam, ab133112), SREBP1 (Abcam, ab133125), and SREBP2 (Abcam, ab133111) were detected with the corresponding kits according to the manufacturer’s instructions. In brief, hMDMs subjected to the desired treatments after HTNV infection were collected for extraction of the nuclear protein, which contained multiple activated transcription factors. Then, the nuclear extract was added to a 96-well plate containing the Stat1, p65, SREBP1, or SREBP2 response elements (double-stranded DNA sequence). The corresponding transcription factor was detected by the addition of a specific primary antibody directed against it. A secondary antibody conjugated to HRP was added to provide a sensitive colorimetric readout at 450 nm.
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4

Kidney NF-κB Transcription Factor Assay

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A semi-quantitative colorimetric NF-κB (p65) transcription factor activity assay was performed using a kit (Abcam, ab133112) with isolated nuclear fraction of kidney samples following the manufacturer’s guidelines. Nuclear fraction isolation was performed by Epiquik nuclear extraction kit (Epigentek, OP-0002-1).
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5

Quantification of NF-κB Activity

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Nuclear extracts were isolated from heart and brain tissues collected at R30 using a commercially available nuclear extract kit (EMD #2900, Billerica, MA). The DNA binding activity of NF-κB (p50/p65) in the nuclear fraction was determined using an ELISA-based nonradioactive NF-κB p50/p65 transcription factor assay kit according to the manufacturer's protocol (Abcam #ab133112, Cambridge, MA).
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6

EGCG Modulates NF-κB Activity in Pancreatic Cells

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ELISA-based transcription factor assay kit (ab133112, Abcam) was used to determine the EGCG effect on p65-NF-κB activity in human pancreatic cell lines (MIAPaCa-2 and SU.86.86). The nuclear extract was extracted by lysing the treated cells with EGCG (10–100μM for 24 h) using hypotonic HEPES lysis buffer (pH 7.4) provided with a nuclear extraction kit (ab113474, Abcam). As recommended by the manufacturer, the supernatant was taken and utilized to measure intracellular p65-NF-κB by ELISA. In brief, the p65-NF-κB response element with a specific double-stranded DNA (dsDNA) sequence was immobilized onto the bottom of wells in a 96-well plate. The p65-NF-κB contained in a nuclear extract bind specifically to the p65-NF-κB response elements. The p65-NF-κB was detected by adding a specific primary antibody directed against p65-NF-κB. A secondary antibody that was HRP-conjugated was added, and a spectrophotometer was used to measure the absorbance at 492 nm.
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7

Quantifying Inflammatory and Apoptotic Markers

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Inflammation markers including TNF-α (ab46070), IL-1β (ab100768), IL-6 (ab100772) and IL-10 (ab133112) ELISA kits were obtained from Abcam Co., Eugene, OR, USA. As for the apoptotic signaling markers, cleaved caspase-3 (KHO1091) was purchased from Thermo Fisher Scientific Inc., Waltham, MA, USA, whereas caspase-9 (LS-F4141) was acquired from Biocompare, San Francisco, CA, USA. These markers were measured according to the manufacturer’s instructions using a microplate reader SpectraMax i3X (Molecular devices, San Jose, CA, USA).
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8

Fractionation and Transcription Factor Analyses of BMDM and Muscle Tissue

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Nuclear and cytoplasmic fractionation of BMDM or muscle tissue lysates was carried out according to manufacturer instructions (Abcam, ab113474). Briefly, cells were collected with cell scraper and pelleted by centrifugation. Pellets were re-suspended in the pre-extraction buffer. After a centrifugation, supernatant containing cytoplasmic fraction was frozen down and stored. The pellet was again centrifuged and re-suspended in nuclear extraction buffer to generate the nuclear fraction. The nuclear fraction was used for HIF-1α, STAT3, and NF-κB p65 transcription assays according to the manufacturer’s instructions (Abcam; ab133104, ab207229, and ab133112, respectively).
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9

Measuring NF-κB Nuclear Activity

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For the measurement of NF-κB activity, the nuclear fraction was first extracted by using an NE-PER nuclear extraction kit (Thermo Fisher Scientific, Waltham, MA, United States) and then subjected to an NF-κB activity assay (Abcam, ab133112, Cambridge, MA, United States).
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10

Fractionation and Transcription Factor Analyses of BMDM and Muscle Tissue

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Nuclear and cytoplasmic fractionation of BMDM or muscle tissue lysates was carried out according to manufacturer instructions (Abcam, ab113474). Briefly, cells were collected with cell scraper and pelleted by centrifugation. Pellets were re-suspended in the pre-extraction buffer. After a centrifugation, supernatant containing cytoplasmic fraction was frozen down and stored. The pellet was again centrifuged and re-suspended in nuclear extraction buffer to generate the nuclear fraction. The nuclear fraction was used for HIF-1α, STAT3, and NF-κB p65 transcription assays according to the manufacturer’s instructions (Abcam; ab133104, ab207229, and ab133112, respectively).
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